Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71850 473 / 7e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G24320 269 / 3e-83 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 209 / 1e-60 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G48040 190 / 1e-53 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G39120 180 / 4e-50 WTF9 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 140 / 1e-35 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 137 / 6e-35 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G33495 123 / 5e-30 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 122 / 1e-29 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G01037 117 / 2e-27 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223200 [exp] 268 / 4e-82 AT4G24320 437 / 4e-152 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 197 / 5e-56 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G230900 [exp] 192 / 2e-54 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.008G036600 [exp] 181 / 2e-50 AT2G39120 509 / 0.0 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 161 / 5e-43 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 132 / 4e-33 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.014G096800 [exp] 119 / 3e-28 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.001G439100 [exp] 112 / 3e-26 AT1G79120 483 / 2e-170 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G245100 [exp] 110 / 8e-26 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035074 [exp] 532 / 0 AT1G71850 479 / 5e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10017896 [exp] 525 / 2e-178 AT1G71850 478 / 7e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 202 / 1e-57 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10011327 [exp] 190 / 1e-53 AT5G48040 425 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005750 [exp] 184 / 1e-51 AT1G71850 263 / 9e-85 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000847 [exp] 182 / 3e-51 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10012201 [exp] 177 / 3e-49 AT5G48040 424 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10027445 [exp] 160 / 3e-45 AT4G24320 206 / 9e-66 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10038710 [exp] 166 / 2e-44 AT2G39120 467 / 4e-164 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 144 / 5e-37 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [poplar] [flax] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Potri.013G115500.2 pacid=42811482 polypeptide=Potri.013G115500.2.p locus=Potri.013G115500 ID=Potri.013G115500.2.v4.1 annot-version=v4.1 ATGCAATTCCTCTTCCGCTCCCTCCCTAAACCCCGCCACCAAGGTCACCGCCGCAGCCTCGTCGACTTTGCGGCCATCAAGCACGTCAGAGACAGGGGCT TAGACCATGCAGTTGAGCGAGAAAAGCACTTAAAGCCAGTGCTTTCAATCAAGAACTTAATAAAATCAGAGCCATCAAGATCACTCCCTATCTCCATAGT CACTCAACAAAAAGACTTCCTCAAAATACCAATACGGCCAATAGAGTTAATTAGAAGATACCCTTCAGTCTTTCAAGAATTTCTACCTGGTGGCATTGGA ATCCATCCTCATGTCAAGTTAACACAACAGGTACTTGACCTTGATATTGAAGAACAGTTAGTTTATCAAAGTGAGAGTTATAAGAACGATGTTGCTAATA GGCTTTTAAAGTTGTTAATGATTTCAAGAATTGATAAAATTCCATTAAAGCTTCTTGATTTTTTATTATGGGATTTGGGTTTGCCTCAAGATTGTGTCAA GAGTTTGGTTCCTGAATTCCCTGATTATTTTAGAGTTCTCGGGGATAAGAATTTGTCGCCTTGGTCGGGTTCGGATTTGGGGTTGGAGTTGGTTTGCTGG AGTGATGAACTGGCTGTTTCAGTTATGGAAAAGAGGGCGAAAAGTAGAGAAACTGGTTATGTTAAAGGGATGCCTATTGAGTTTCCAATGCAGTTTTCGA AGGGTTTTGAAATAGATAAGAGGTTGAAGCAGTGGATTGGTGACTGGCAAAAGTTGCCTTATGTTTCTCCCTATGAGAATGCTATGCATCTTGGGCCTAA TACTGATGAATCAGATAGGTGGGCGGTGGGTGTGTTGCATGAGGTACTTAATCTTTCTGTTTCGAAGAAAGTGGAGAAGGACACTTTGTTGTGTTTAGGA GAGTGGCTGGGGATCCGGTCGAGGTTTAAGAGAGCATTGCTACACCATCCAGGGATATTTTATTTGTCGAATAAGATAGGGACTTATACTGTTGTTTTGA AGGAGGGATATAAGAGGGGATTGTTAGTTGAGAAGAATCCAGTGGTGGATATTAGGAATCAGTATATTCATCTTATGCACACAGTTGTCGAAGAACGTAA ATCAATTACTGTACATGGAGGAAGCCAACAACAAGAAAAGAAGACTGATGGCAAATCTGAAGGGCAAGGAGAAAAACAAGATGCTAATGATTGCGTGGAA GTGTCTGATGCGGGGTCTGATTTTGAGGATGATAGTGAAGATGGTTACGAGTATAATGAGGAGGAGGGAGGCGAGAGTAGGAAAAATGCTCATAGAAATG CCCCAACTAACAGGGGAAGAGCAGACAGGAATAAGAATTTGGATGTGAGGGGGAACTTGAAGTATGCTAGAAGAGAAAGGGGGGTTGAGAAACACCATGG TAAGACAAGGGATAAAGTTGTACAAAATGACGACTATAAGTATAATGATGATGAAGAGGAAGGCGAGAGTAGGACACATGCTCGTACAAAAACCCCAAGG GGAAGAGCAGATGAGAATAAGAATTTAGTTGCGAGGGGGCGGTCAAGAAATGTTAGAAGAGAAAGGGAGGTCGAGAGACACCACGGTAAGACAAGGGATA AAGTTGTATCAGAAGATGATTATAAGTACAACGATGACGAGGAGGAAGGTGAAATTAGGACACATGCTCGTACAAAATCCCCAAGGGGGAGAGCAGATGA GAATAAGAATTTAGATGTGAGGGGGCGCTCAAGAAATGTTAGAAGAGAAAGGGAAGGTGAAATTAGGACACATGCTCGTACAAAATCCTCAAGGGGGAGA GCAGATGAGAATAAGAATTTAGATGTGAGGGGGCGTTCAAGAAATGTTAGAAGAGAAAGGGTGGTCGAGAAACACCACGGTAAGACAAGGGATAAAGTTG TATCAAAAGATGATTATATGTACAATGATGATGATGGGGAGGAAGGAGAGGGTAGGAGACATGCTCATAGAAATGCCCCACGCAGCAGAGGAAGAGGAGA TAAGAAGACTACTTTAGATTCAAGGGAGCATGCAAGGAATGCTGGAAGAGATAGAGGGATTGAAAAGCGCCATTTCAAAACCAAGGATAAATTTCGACCA AAAGATTCTATCAGAAAAGAAATGAGTAGAGGGTACAATTTCCACGAAAGGTCACAAGAGTGA
AA sequence Show only first row Show all	>Potri.013G115500.2 pacid=42811482 polypeptide=Potri.013G115500.2.p locus=Potri.013G115500 ID=Potri.013G115500.2.v4.1 annot-version=v4.1 MQFLFRSLPKPRHQGHRRSLVDFAAIKHVRDRGLDHAVEREKHLKPVLSIKNLIKSEPSRSLPISIVTQQKDFLKIPIRPIELIRRYPSVFQEFLPGGIG IHPHVKLTQQVLDLDIEEQLVYQSESYKNDVANRLLKLLMISRIDKIPLKLLDFLLWDLGLPQDCVKSLVPEFPDYFRVLGDKNLSPWSGSDLGLELVCW SDELAVSVMEKRAKSRETGYVKGMPIEFPMQFSKGFEIDKRLKQWIGDWQKLPYVSPYENAMHLGPNTDESDRWAVGVLHEVLNLSVSKKVEKDTLLCLG EWLGIRSRFKRALLHHPGIFYLSNKIGTYTVVLKEGYKRGLLVEKNPVVDIRNQYIHLMHTVVEERKSITVHGGSQQQEKKTDGKSEGQGEKQDANDCVE VSDAGSDFEDDSEDGYEYNEEEGGESRKNAHRNAPTNRGRADRNKNLDVRGNLKYARRERGVEKHHGKTRDKVVQNDDYKYNDDEEEGESRTHARTKTPR GRADENKNLVARGRSRNVRREREVERHHGKTRDKVVSEDDYKYNDDEEEGEIRTHARTKSPRGRADENKNLDVRGRSRNVRREREGEIRTHARTKSSRGR ADENKNLDVRGRSRNVRRERVVEKHHGKTRDKVVSKDDYMYNDDDGEEGEGRRHAHRNAPRSRGRGDKKTTLDSREHARNAGRDRGIEKRHFKTKDKFRP KDSIRKEMSRGYNFHERSQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71850			Ubiquitin carboxyl-terminal hy...		Potri.013G115500 [exp]	0	1
AT3G58660			Ribosomal protein L1p/L10e fam...		Potri.015G147700 [exp]	2.44	0.8557
AT3G59820			LETM1-like protein (.1.2)		Potri.007G142000 [exp]	9.21	0.8042
AT1G50920			Nucleolar GTP-binding protein ...		Potri.001G258900 [exp]	9.48	0.7957
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Potri.006G055300 [exp]	12.60	0.8324
AT1G79150			binding (.1)		Potri.005G096900 [exp]	12.96	0.8268
AT5G17930			MIF4G domain-containing protei...		Potri.013G061400 [exp]	13.85	0.8244
AT4G16630			DEA(D/H)-box RNA helicase fami...		Potri.005G241300 [exp]	14.24	0.8255
AT5G54910			DEA(D/H)-box RNA helicase fami...		Potri.001G423300 [exp]	20.56	0.8240
AT1G06710			Tetratricopeptide repeat (TPR)...		Potri.007G123600 [exp]	21.56	0.8307
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Potri.013G145300 [exp]	25.41	0.7707

Compare expression of checked genes

Potri.013G115500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.