Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71870 637 / 0 MATE efflux family protein (.1) AT5G19700 430 / 9e-147 MATE efflux family protein (.1) AT4G29140 416 / 4e-141 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT2G38510 385 / 1e-129 MATE efflux family protein (.1) AT5G49130 385 / 3e-129 MATE efflux family protein (.1) AT1G58340 377 / 1e-125 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT4G23030 358 / 6e-119 MATE efflux family protein (.1) AT5G52050 355 / 1e-117 MATE efflux family protein (.1) AT5G52450 243 / 3e-74 MATE efflux family protein (.1) AT4G22790 241 / 2e-73 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G086100 [exp] 878 / 0 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.010G011400 [exp] 432 / 8e-148 AT5G49130 611 / 0.0 MATE efflux family protein (.1) Potri.003G121400 [exp] 427 / 2e-145 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.012G133500 [exp] 417 / 2e-141 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.015G135600 [exp] 412 / 7e-139 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 407 / 5e-137 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.007G043100 [exp] 375 / 5e-125 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.016G134800 [exp] 346 / 2e-113 AT2G38510 597 / 0.0 MATE efflux family protein (.1) Potri.001G115400 [exp] 267 / 3e-83 AT4G22790 487 / 3e-169 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017836 [exp] 434 / 5e-148 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10007231 [exp] 424 / 2e-143 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10027417 [exp] 421 / 2e-142 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10009788 [exp] 400 / 3e-135 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10012944 [exp] 384 / 1e-128 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10028230 [exp] 358 / 3e-118 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10025237 [exp] 341 / 3e-111 AT2G38510 640 / 0.0 MATE efflux family protein (.1) Lus10025156 [exp] 318 / 4e-104 AT2G38510 568 / 0.0 MATE efflux family protein (.1) Lus10027277 [exp] 273 / 6e-88 AT1G71870 241 / 1e-75 MATE efflux family protein (.1) Lus10038987 [exp] 274 / 4e-86 AT1G71870 527 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.013G115600.1 pacid=42811218 polypeptide=Potri.013G115600.1.p locus=Potri.013G115600 ID=Potri.013G115600.1.v4.1 annot-version=v4.1 ATGACAGAGAAAGAACTGGATTTCTATTCTCACAAACTTCCCTCTGCTTCTCAGGTTGTTGAGGAGCTAAAAGAGTTATGGGGCATGGCTTTGCCAATAA CAGCTGCTCACTTAATGGCCTTTTTTAGAGCAGTGGTCTCAGTTATGTTCTTGGGCAGGCTAGGCAGTCTAGAACTAGCTGGTGGTGCACTTTCCATTGG GTTTACAAACATCACTGGTTACTCTGTCCTTGTGGGCTTAGCTTCTGGGCTAGAGCCAGTCTGTAGCCAAGCTTATGGCAGCAAGAATTGGGACCTCCTT TCACTCTCTCTTCAACGCATGATCTTGATACTAGGCATTGCAATCATACCCATAAGTCTCTTGTGGCTTAATCTTGAATCAATCATGAATTTTATGGGCC AAGATCCAAATATTACTGCAATGGCTGCAACTTACTGTATTTACTCTCTCCCAGACCTTTTAACCAACACTTTATTACAGCCCTTGAGGGTTTTCTTAAG GTCACAGGGGGTGACAAAACCCTTGATGTATTGCTCTTTATTGGCCGTTATTTTCCACGTGCCGTTGAACTATGTTCTTGTTGTGGTGATGGGGTGGGGG GTCCCTGGGGTGGCTTTGGCATCAGCCGTGACTAACATGAACATGGTGGTGTTGATGGTGGCGTATGTGTGGTGGGTTAGTGGACAGTGGGAGATGAGAT GGAGGGTCGAGATTGGAGGTGTGTGTGGTGGGGTGGGACCACTTTTGAAGTTGGCAGTCCCTAGTTGTTTAGGGATTTGCTTGGAGTGGTGGTGGTATGA GATAGTGACTCTCTTGGCAGGGTACTTGCCTAATCCCACACTGGCGGTGGCCGCCACTGGGATACTAATCCAGACCACTAGCATGATGTACACTGTCCCC ATGGCACTTGCTGGCTGTGTCTCTGCTCGGGTAGGGAATGAACTTGGAGCTGGAAAGCCGTACAAAGCCAAGTTGGCCGCCATGGTTGCACTGGGTTGTG CCTTTGTGATTGGTATTCTCAATGTGACATGGACAGTATTCCTTAGAGAGCGATGGGCTGGCTTGTTCATTAAAGATGTGCGTGTTAAAGGTCTTGTAGC AGCTGTTTTGCCAATAATAGGCCTCTGTGAGCTTGGCAACTGCCCTCAAACAACTGGCTGTGGCATCCTACGTGCCACGGCACGGCCCGCTGTCGGGGCT GGTATAAATTTGGGCTCATTTTACTTTGTGGGCACCCCAGTGGCAGTGGGGCTGGCCTTCGGGCTAGATGTCGGGTTTTCTGGACTGTGGCTAGGGCTCT TGTCAGCCCAAGCGGCTTGTGCTTTGTCTATCCTTTATGTTGTGTTGATCCGTACAGATTGGGAACATGAGGCTCTGAAGGCCAAGGAGTTGACCAGCAT GGAAATGAGTGCATGCAATGGCGTTGGTCGCAAACAACATGAAGAATACGAAGAAGAGAGTAAAGGGTTGTTAATGAATGTTAATGGTAACATGGTAGAT GATGTTTGA
AA sequence Show only first row Show all	>Potri.013G115600.1 pacid=42811218 polypeptide=Potri.013G115600.1.p locus=Potri.013G115600 ID=Potri.013G115600.1.v4.1 annot-version=v4.1 MTEKELDFYSHKLPSASQVVEELKELWGMALPITAAHLMAFFRAVVSVMFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLL SLSLQRMILILGIAIIPISLLWLNLESIMNFMGQDPNITAMAATYCIYSLPDLLTNTLLQPLRVFLRSQGVTKPLMYCSLLAVIFHVPLNYVLVVVMGWG VPGVALASAVTNMNMVVLMVAYVWWVSGQWEMRWRVEIGGVCGGVGPLLKLAVPSCLGICLEWWWYEIVTLLAGYLPNPTLAVAATGILIQTTSMMYTVP MALAGCVSARVGNELGAGKPYKAKLAAMVALGCAFVIGILNVTWTVFLRERWAGLFIKDVRVKGLVAAVLPIIGLCELGNCPQTTGCGILRATARPAVGA GINLGSFYFVGTPVAVGLAFGLDVGFSGLWLGLLSAQAACALSILYVVLIRTDWEHEALKAKELTSMEMSACNGVGRKQHEEYEEESKGLLMNVNGNMVD DV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71870			MATE efflux family protein (.1...		Potri.013G115600 [exp]	0	1
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Potri.014G056800 [exp]	2.44	0.8249
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Potri.002G007400 [exp]	2.82	0.8268	GLR3.2
AT5G42785			unknown protein		Potri.005G228800 [exp]	4.24	0.7968
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.001G019100 [exp]	6.48	0.7637
AT3G48660			Protein of unknown function (D...		Potri.015G098300 [exp]	8.94	0.8018
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G026100 [exp]	9.79	0.8096
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Potri.009G118800 [exp]	12.36	0.7766	Pt-APL3.2
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Potri.001G082400 [exp]	13.22	0.7858
AT3G50810			Uncharacterised protein family...		Potri.009G110200 [exp]	15.49	0.7182
AT3G14720		ATMPK19	ARABIDOPSIS THALIANA MAP KINAS...		Potri.011G102500 [exp]	16.24	0.7839	Pt-TDY1.1

Compare expression of checked genes

Potri.013G115600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.