Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 939 / 0 lectin protein kinase family protein (.1) AT2G19130 368 / 1e-114 S-locus lectin protein kinase family protein (.1) AT5G24080 355 / 1e-113 Protein kinase superfamily protein (.1) AT4G32300 356 / 4e-110 SD2-5 S-domain-2 5 (.1) AT5G60900 326 / 2e-99 RLK1 receptor-like protein kinase 1 (.1) AT4G00340 327 / 5e-99 RLK4 receptor-like protein kinase 4 (.1) AT5G35370 317 / 5e-95 S-locus lectin protein kinase family protein (.1) AT2G41890 305 / 9e-92 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) AT5G20050 271 / 2e-82 Protein kinase superfamily protein (.1) AT1G65800 278 / 5e-81 ARK2 receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G086400 [exp] 1295 / 0 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.019G086200 [exp] 1292 / 0 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.019G086300 [exp] 1020 / 0 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.013G115800 [exp] 1011 / 0 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.015G026300 [exp] 421 / 2e-134 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.010G103300 [exp] 413 / 3e-132 AT1G34300 375 / 1e-117 lectin protein kinase family protein (.1) Potri.019G119200 [exp] 413 / 1e-131 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.014G086900 [exp] 403 / 2e-127 AT4G00340 862 / 0.0 receptor-like protein kinase 4 (.1) Potri.006G254600 [exp] 392 / 1e-123 AT4G32300 965 / 0.0 S-domain-2 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006052 [exp] 1044 / 0 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10028711 [exp] 777 / 0 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10039315 [exp] 429 / 6e-137 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10002917 [exp] 402 / 2e-127 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 400 / 2e-126 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10024348 [exp] 397 / 3e-125 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10013252 [exp] 385 / 3e-121 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10029802 [exp] 383 / 2e-120 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10042266 [exp] 379 / 7e-119 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 379 / 3e-118 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain
Representative CDS sequence Show only first row Show all	>Potri.013G115700.2 pacid=42810866 polypeptide=Potri.013G115700.2.p locus=Potri.013G115700 ID=Potri.013G115700.2.v4.1 annot-version=v4.1 ATGAAACTCCAAGATCTTTTCCCTTTTCTGTGTATCTTCTTCACTATCACAACAGCACAGACAACAATCCAACCAGGCACCACTCTCTCTGCCTCAAACC CAAACCAAACCTGGTCTTCACCAAACAGCACTTTCTATATAGGGTTTTCCCAAGTGGATTCATCTTCGTCTTACACCTTAACCATCAACTACAACGGCGG TGTCCCAATTTGGACAGCAGGCAACTCTACTACCACGGTGAATTCAGAGGGGTCCTTTCAATTCCTGTCCTCCGGCAACCTCCGCCTCCTCAACGGCTCT GGCGCCACTGTCTGGGACTCCAACACTACTGGACGCGGTGTCACCACTGCTTCACTTGATGAATTTGGTAATTTAGTGTTAAAGAATGGAACTTTACCTG TTTGGTCATCTTTTGATAACCCCTCTGATACCATAGTACCCAATCAGACTCTTCGTGTTGATCAAGTTTTAAGATCTGGGTCTTATTCATTTAGGTTTCT TAGTTCAGGAAATCTAACTTTGAAATGGAATGATAGTGTAGAGTATTGGAATCAAGGTAATACTTCTATTAATGCTAATTTGACATCGCCTACTTTGGGG TTGCAACCAACTGGGATTTTGTCAATTTTTTCTGCTGCTTTTACAAGCGGGCCACATATTGTGGCTTATAGTAGTGATTACGGTGATGTGGGTACAAGGT TGAGGTTTCTGAAGTTGGATGAAGATGGGAACTTTAAGATGTATAGTACTGATATAGGTAGTAAAACTGCAAATATGGTATGGTCAGCTTTGACTGACCA ATGTGAGGTTTTTGGTTATTGTGGGAATATGGGAATTTGTAGTTATAATGAGTCGAGTTCGAGTCCAATTTGTGATTGTCCATCTGAGAATTTTGAGCCT GTCGATGTGAATGATAGTAGACAAGGGTGTAAAAGAAAAGCTGAGATTGATAGTTGTCCGGGGAATGCTACTATGTTAGAGATAGATCATGCAAAATTCT TGACCTATGAGCCTGAGTTGTCTGCTCAGATTTTCTACATGGGAATATCAGCTTGCAGGTCGAATTGTCTTTCTCAAGGTTCAGCTTGTATTGCTTCTAC ATCTTTGTCTGATGGAACTGGGCAGTGCTACGCAAAACCTCCGGGCTTTATCAGTGGTTATCGGAATCCAGCACTTCCCAGTACTTCGTATGTGAAAGTT TGTGGGCCAGCGCTACCAAACCCTCCACCTGGTGTGCTGACTGTGGAGAAAAGCAGAAGTGGGAGATTTCGCTTCTGGGTTGTTTGTGTTGCTGTTGCGA TTACCCTTTTGGGTTTGATTGCCTTGGAGAGTGGTCTGTGGTGGTGGTGTTGTAGAAACAGTCCCAAGTTTGACAGTTTGTCAGCTCAGTATGCACTACT GGAGTATGCATCTGGTGCTCCAGTGCAGTTCTCGTATAAAGAGCTGCAGCGCTCGACGAAAGAGTTTAAAGAGAAGCTTGGAGCAGGAGGGTTTGGAGCT GTTTATAAAGGGGTTCTTGCTAACAAAGAAGTTGTTGCAGTGAAGCAACTTGAGGGAATTGAGCAGGGTGAGAAACAGTTCAGGATGGAGGTTGCAACTA TTAGTAGCACTCACCATTTGAATTTGGTTAGATTGATTGGTTTTTGCTCCGAGGGTCGGCATAGGCTGCTGGTTTATGAGTTCATGAAAAATGGGTCTCT TGATAATTTCCTTTTCACTACAGAAGAGCAGTCAGGAAGATTGTTGAATTGGGAGCAGAGGTTTAAAATTGCCCTTGGAACTGCAAAAGGAATCACTTAT CTTCACGAGGAATGTCGAGACTGCATTGTCCACTGTGACATAAAGCCAGAAAACATTCTTTTGGATGAGAACTATAAGGCCAAGGTGTCTGATTTTGGTC TTGCAAAGCTCATAAATGCCAAGGATCACAGGTATAGGACACTGACCAGTGTTAGAGGAACAAGAGGATACTTGGCACCAGAATGGCTTGCAAATCTTCC AATAACTTCCAAATCTGATATCTACAGTTATGGGATGGTTTTGTTGGAGATAGTGAGTGGCAGAAGGAATTTTGAAGTCTCAGCAGTAACAAACCGTAAA AAGTTCTCTGTTTGGGCTCATGAAGAGTTCGAGAAGGGAAATGTTAATGCAATTTTGGACCAAAGGCTTACAGACCAAGATGTGGATATGGAGCAAGTGA CAAGGGCAATTCAAGTGAGCTTTTGGTGCATCCAGGAGCAGCCATCTCAGAGGCCAATGATGGGAAAAGTGGTGCAGATGCTGGAGGGAATTGCTGAGAT TGAGAGACCACCAGCACCAAAGGCAATAACAGAAAGTTCTACTACTAGTGGAACGAGCATAATGAGCAGCAATGTCAGTGCTCTCACAACTTTTGCAGCA TCAGCTCCAGCTTCCTCATCTTCCTCATCATATCAGACTATGGGAGTTTCGCCTTTAGCTTCAGGTAGAAATATAGAGAGGGCATCTTCATCACTGTTGC ATTCAGACCCAAACTGA
AA sequence Show only first row Show all	>Potri.013G115700.2 pacid=42810866 polypeptide=Potri.013G115700.2.p locus=Potri.013G115700 ID=Potri.013G115700.2.v4.1 annot-version=v4.1 MKLQDLFPFLCIFFTITTAQTTIQPGTTLSASNPNQTWSSPNSTFYIGFSQVDSSSSYTLTINYNGGVPIWTAGNSTTTVNSEGSFQFLSSGNLRLLNGS GATVWDSNTTGRGVTTASLDEFGNLVLKNGTLPVWSSFDNPSDTIVPNQTLRVDQVLRSGSYSFRFLSSGNLTLKWNDSVEYWNQGNTSINANLTSPTLG LQPTGILSIFSAAFTSGPHIVAYSSDYGDVGTRLRFLKLDEDGNFKMYSTDIGSKTANMVWSALTDQCEVFGYCGNMGICSYNESSSSPICDCPSENFEP VDVNDSRQGCKRKAEIDSCPGNATMLEIDHAKFLTYEPELSAQIFYMGISACRSNCLSQGSACIASTSLSDGTGQCYAKPPGFISGYRNPALPSTSYVKV CGPALPNPPPGVLTVEKSRSGRFRFWVVCVAVAITLLGLIALESGLWWWCCRNSPKFDSLSAQYALLEYASGAPVQFSYKELQRSTKEFKEKLGAGGFGA VYKGVLANKEVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDNFLFTTEEQSGRLLNWEQRFKIALGTAKGITY LHEECRDCIVHCDIKPENILLDENYKAKVSDFGLAKLINAKDHRYRTLTSVRGTRGYLAPEWLANLPITSKSDIYSYGMVLLEIVSGRRNFEVSAVTNRK KFSVWAHEEFEKGNVNAILDQRLTDQDVDMEQVTRAIQVSFWCIQEQPSQRPMMGKVVQMLEGIAEIERPPAPKAITESSTTSGTSIMSSNVSALTTFAA SAPASSSSSSYQTMGVSPLASGRNIERASSSLLHSDPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34300			lectin protein kinase family p...		Potri.013G115700 [exp]	0	1
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Potri.004G047700 [exp]	2.44	0.9219
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048700 [exp]	2.44	0.9205
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.014G141400 [exp]	4.89	0.9036
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Potri.015G019800 [exp]	5.19	0.9287
AT1G10340			Ankyrin repeat family protein ...		Potri.018G042200 [exp]	5.74	0.9041
AT5G57580			Calmodulin-binding protein (.1...		Potri.004G035100 [exp]	7.54	0.8949
AT4G25160			U-box domain-containing protei...		Potri.004G233000 [exp]	8.24	0.9141
AT3G63380			ATPase E1-E2 type family prote...		Potri.005G215600 [exp]	8.48	0.8977
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.019G123500 [exp]	9.89	0.9114
AT4G33920			Protein phosphatase 2C family ...		Potri.007G051900 [exp]	10.00	0.9137

Compare expression of checked genes

Potri.013G115700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.