Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 857 / 0 lectin protein kinase family protein (.1) AT5G24080 355 / 3e-114 Protein kinase superfamily protein (.1) AT2G19130 362 / 2e-112 S-locus lectin protein kinase family protein (.1) AT4G32300 361 / 2e-112 SD2-5 S-domain-2 5 (.1) AT4G00340 319 / 1e-96 RLK4 receptor-like protein kinase 4 (.1) AT5G35370 312 / 2e-93 S-locus lectin protein kinase family protein (.1) AT2G41890 284 / 4e-84 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) AT5G20050 269 / 1e-81 Protein kinase superfamily protein (.1) AT5G60900 276 / 2e-81 RLK1 receptor-like protein kinase 1 (.1) AT4G21390 263 / 1e-75 B120 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G086300 [exp] 1310 / 0 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.019G086200 [exp] 1051 / 0 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.013G115700 [exp] 1026 / 0 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G086400 [exp] 1023 / 0 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.015G026300 [exp] 427 / 3e-137 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.T084701 [exp] 392 / 2e-124 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085100 [exp] 392 / 5e-124 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211800 [exp] 392 / 5e-124 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.019G119200 [exp] 388 / 2e-122 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006052 [exp] 972 / 0 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10028711 [exp] 691 / 0 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10039315 [exp] 419 / 7e-134 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10013252 [exp] 370 / 5e-116 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10024348 [exp] 368 / 2e-114 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10002917 [exp] 356 / 3e-110 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 352 / 1e-108 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10032944 [exp] 352 / 2e-108 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 350 / 2e-106 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10042266 [exp] 340 / 1e-104 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.013G115800.1 pacid=42812448 polypeptide=Potri.013G115800.1.p locus=Potri.013G115800 ID=Potri.013G115800.1.v4.1 annot-version=v4.1 ATGAACTTCTGCTTTCTTCTCCTCCTCCAGCTTCCTCTCCTTCTCGTCTTCACGACTACTTCCACAGCAAACATACCACCAGGCTCCTCTCTTTATGCCT CCAACACAAGCCAAACCTGGTCGTCTCCAAACAACACTTTCTTTCTAGGCTTTACCCAAGTGGATCCCACTTCCTACACCGTTTCCATCTCCCATAGTAC TGCTGGAGTTTCCATCTGGACAACTGGCAATGTTGTTGCTGGCACTGCCTCTGCAGCTGTCATTGACTACGGTGTAGAATTCCAGTTCCTCCGCAACGGA AATCTCCGTCTCATCAACGGTTCAGGTGCCCCCGTGTGGACCTCCAACACTGGCAACCTTGGTGTCACTTCTGCTTCACTTGATGACACTGGAAACCTGG TACTGAAAGCCGGCAGTATCAATGTCTGGTCCAGTTTTGAAAACCCAACCGACACTCTTGTCCCGTCACAGAATTTAACTGTAAACCAAACTTTGCGATC AGGGGTTTACTCTTTCCGGCTTCTAAGCAGTGGAAATATGAGCTTGACATGGAACGACAGTGTTGTGTACTGGAATCAAGGCTTGAGTTCTGCTTTGAAG TTGACTTCTCCAACCTTGCAGTTGAAGTCAAATGGGATTTTAACTCTTTTAGATGCTGGTTCGCAGATGTCTGTTGCTTTTGGCAATGATTATGGAGAAG GGGGTGAGGTAATGAGATTTTTGAGGTTAGGTAGCGATGGGAATTTGAGAATGTATAGTGGTGGAACTACAACTATGACATGGGCTGCTTTAGCAGATCA GTGTCAGGTTTATGGATACTGTGGAAACATGGGGATCTGTAGTTACAACGAGTCAAGTTTGAGTCCGATTTGCAAATGCCCATCTCTGAATTTTGAGGCT GTGGATGTGAATGATAGTAGAAAAGGGTGTAAGAGAAAAGTGGAGGTTGCGGATTGTGCAGGGAACGTAACAATGCTGGAGTTAAAGCAGACTAAATTTC TTACTTTCCAGGCTCAGCAAATTGTTACCATTGGGATAACAGCTTGCAGAGTGAATTGTTTATCAAGCACTTCTTGCATGGCTTGCACTTCTACATCAGA CACATATGTACTATATTGTTACATGAAAAACACACCTGATTTTGTTAGTGGATATCAGGGTCCAGTGCTTCTTAGTACTTCTTATATTAAGGTTTGTGGA CCAGTGCAACCAAATCCTTTGCCTTCTGACCAGATTGGTGGAGATAAAAAGTTCCGGGAATCGCGGGGTTGGAAAGTTGGTGTCTTGGTTACAGGCACTA TTTGGGGTTTGGCTGCTTTAGTGGGTTTGTTTTGGTGGTTTTGTTGCAAAAATAGTCCCAAATTTGGAGGTGTGTGGGCTCAGTATACACTTCTTGAATA TGCCTCAGGTGCTCCCGTTCAGTTTTCATACAAGGACCTGCATCGCTGGACGCAGGGGTTTAAGCATAAACTTGGAGCAGGAGGGTTTGGAGCTGTTTAT AGAGGAGTTCTTGCTAACAGAACAGTAGTTGCAGCAAAGCAACTTGAGGGAATTGAACAAGGCGAGAGACAGTTTCGGATGGAGGTTGCAACTATAAGCA GTACTCACCATTTGAATCTGGTTAGATTGATTGGCTTTTGCTCCGAAGGGCGTCACAGGCTTTTAGTATACGAGTTCATGAAAAATGGTTCTTTGGATCA TTTCCTGTTCTCGACCGAAGATCAGTCAGGGAAATTATTGAATTGGAAGCGCAGGTTCAACATTGCTCTTGGGACTGCGAGAGGAATCACATATCTTCAT GAGGAATGTCGAGATTGCATTGTTCATTGTGATATAAAGCCAGAAAACATTCTCTTGGATGCGAATTTCAATGCCAAGGTGTCTGATTTTGGCCTAGCGA AGCTTATAAGCACAAAGGATCAAAGATACCGGTCCTTGACTACCATTAGAGGCACTAGAGGATATTTGGCACCAGAATGGCTAGCAAACCTCCCAATAAC ATCAAAATCTGATCTTTACAGTTATGGTATGGTTTTGTTGGAGATTGTGAGTGGGAGGAGGAACTTTGAAGTCTCAGCAGAAATCAATCAAAAGAGGTTC TCAGAGTGGGCTTATGAAGAGTTTGAGAAAGGTAATGTGGAGACAATTGTTGACAAGAGACTTGCTGATCAGGGTGTGGACATGGAACAAGTGATGAGAG CTGTTCAGGTTAGCTTTTGGTGCATTCAGGAGCATCCCTCTCAAAGACCAACAATGGGAAAAGTAGTGCAAATGCTTGAGGGAATTATAGAGATTGCAAG ACCACCAGCACCAAAGGCATTGATGAAAGGCTCTACTAGTGGAACAAGTACGAATTTGAGCAGTAAAGATAGTGCTCAGTCTACTTGTGAAGCCTCAGCT CCACCACCCTCTTCATCTTCATCAATTTAA
AA sequence Show only first row Show all	>Potri.013G115800.1 pacid=42812448 polypeptide=Potri.013G115800.1.p locus=Potri.013G115800 ID=Potri.013G115800.1.v4.1 annot-version=v4.1 MNFCFLLLLQLPLLLVFTTTSTANIPPGSSLYASNTSQTWSSPNNTFFLGFTQVDPTSYTVSISHSTAGVSIWTTGNVVAGTASAAVIDYGVEFQFLRNG NLRLINGSGAPVWTSNTGNLGVTSASLDDTGNLVLKAGSINVWSSFENPTDTLVPSQNLTVNQTLRSGVYSFRLLSSGNMSLTWNDSVVYWNQGLSSALK LTSPTLQLKSNGILTLLDAGSQMSVAFGNDYGEGGEVMRFLRLGSDGNLRMYSGGTTTMTWAALADQCQVYGYCGNMGICSYNESSLSPICKCPSLNFEA VDVNDSRKGCKRKVEVADCAGNVTMLELKQTKFLTFQAQQIVTIGITACRVNCLSSTSCMACTSTSDTYVLYCYMKNTPDFVSGYQGPVLLSTSYIKVCG PVQPNPLPSDQIGGDKKFRESRGWKVGVLVTGTIWGLAALVGLFWWFCCKNSPKFGGVWAQYTLLEYASGAPVQFSYKDLHRWTQGFKHKLGAGGFGAVY RGVLANRTVVAAKQLEGIEQGERQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDHFLFSTEDQSGKLLNWKRRFNIALGTARGITYLH EECRDCIVHCDIKPENILLDANFNAKVSDFGLAKLISTKDQRYRSLTTIRGTRGYLAPEWLANLPITSKSDLYSYGMVLLEIVSGRRNFEVSAEINQKRF SEWAYEEFEKGNVETIVDKRLADQGVDMEQVMRAVQVSFWCIQEHPSQRPTMGKVVQMLEGIIEIARPPAPKALMKGSTSGTSTNLSSKDSAQSTCEASA PPPSSSSSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34300			lectin protein kinase family p...		Potri.013G115800 [exp]	0	1
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Potri.013G095500 [exp]	2.00	0.9691
AT1G70170		MMP	matrix metalloproteinase (.1)		Potri.019G073800 [exp]	2.44	0.9589
AT2G16890			UDP-Glycosyltransferase superf...		Potri.001G348100 [exp]	3.46	0.9578
AT4G12250		GAE5	UDP-D-glucuronate 4-epimerase ...		Potri.003G114600 [exp]	3.74	0.9491
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Potri.018G054400 [exp]	5.19	0.9455
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043500 [exp]	5.91	0.9540
AT1G60470		ATGOLS4	galactinol synthase 4 (.1)		Potri.010G042000 [exp]	6.32	0.9555
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119700 [exp]	10.09	0.9494
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Potri.009G058200 [exp]	10.19	0.9125
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.003G059700 [exp]	10.95	0.9428

Compare expression of checked genes

Potri.013G115800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.