Potri.013G116400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G34260 1185 / 0 FAB1D FORMS APLOID AND BINUCLEATE CELLS 1A (.1)
AT3G14270 396 / 6e-113 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
AT4G33240 386 / 1e-109 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
AT1G71010 360 / 2e-101 FAB1C FORMS APLOID AND BINUCLEATE CELLS 1C (.1)
AT1G60890 77 / 9e-14 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
AT1G10900 76 / 2e-13 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
AT1G77740 76 / 2e-13 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1)
AT3G09920 74 / 8e-13 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3)
AT1G21980 72 / 3e-12 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
AT3G07960 69 / 2e-11 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G087000 2562 / 0 AT1G34260 1190 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1)
Potri.001G163200 580 / 7e-177 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Potri.010G113700 454 / 2e-132 AT1G71010 1728 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1)
Potri.003G072300 412 / 3e-118 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Potri.008G128800 372 / 4e-105 AT1G71010 1714 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1)
Potri.001G027900 74 / 1e-12 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Potri.019G015768 72 / 2e-12 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Potri.004G139900 72 / 3e-12 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Potri.002G088100 71 / 6e-12 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028710 1564 / 0 AT1G34260 1186 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1)
Lus10006051 1539 / 0 AT1G34260 1175 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1)
Lus10035998 427 / 2e-123 AT1G71010 1660 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1)
Lus10038127 394 / 9e-113 AT4G33240 1429 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
Lus10005176 394 / 2e-112 AT4G33240 1046 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
Lus10005173 388 / 3e-110 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
Lus10038129 384 / 3e-109 AT3G14270 1144 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Lus10016702 362 / 7e-102 AT1G71010 1149 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1)
Lus10029661 74 / 8e-13 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Lus10020821 74 / 9e-13 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00118 Cpn60_TCP1 TCP-1/cpn60 chaperonin family
CL0016 PKinase PF01504 PIP5K Phosphatidylinositol-4-phosphate 5-Kinase
Representative CDS sequence
>Potri.013G116400.2 pacid=42812649 polypeptide=Potri.013G116400.2.p locus=Potri.013G116400 ID=Potri.013G116400.2.v4.1 annot-version=v4.1
ATGTGTAGCATGTGTCATTATTGTGGTGCTGATCAGGCAAAGTTGAAGGATGAAAAGCAGAAACTAGAGAATGGAGATTCTTTAAAACTAAATGGTGAAG
AGCCCATTTGGTCTTGCCAATTTTGTCAGGAAAAGCAGGAACCGGAATTGATGAACCATGATGGTTTGAGTCATTCTGTGTCACCAATGATCAGTCCATC
AACTTCGTTGTCTATCAGTGATAGATCTATCTCAAGCTGCAGTGATCTTTCTGTGGATGTAAACTCGCATGACCGGGCTCATCAAGAGGAAGGAACGGTA
CACAGTGCCCAAAAGGATCTAGGTTACGGGGTGAATGACCAACAACACAACACAAGATTGGAAGCTCCTGTAAATAGAGTGGATGGATTACATAAAGTGA
CAGGGAAGGATAGCCATAATGGCAGTGATAGAGACACAGTGAGAGATGTAGAAATTGTGGAACTTGTTAACGATCAAGAATCAGAAGGTAACTCTTCTGC
GAACAGTGTTGGATTTTCAAATGAAGGAAATGATATTTCTCAAATCAGTGACGACGAAGTAGATGCACGGGTTTGGGAGCCTCCTGAAGCAGAAGATCCA
GAGGATGATTTGGACGGTGGTGTGGCTTTTATTGATGACGATGAGGAGTGTGGCGATGGCACAAAATGGGGTAAACCAAGTTCTTTGAGTTGCTGGAGGG
GTGAAGGCAGTCAGAGCTTCAAGTTCAAAGAAGAAAAACAGAAGGCAATGGAAGAAGTGGTTAATGGGAAATTCAAGGCCATCGTGAGTCAACTTCTTAA
AACAGCAGGTGTTGCCTGTGTGGTGAGAGATGGTGAAAGTTGGGTGGATATTGTTACATCTTTATCATGGGAAGCTGCTTCATTTTTGAAGCCTGAAGCA
GTGGATGGGAAAGCAATGGATCTAGATGGTTATGTGAAAGTAAAATGCATTGCAACTGGTTCTCGTAGTGAAAGTCAAGTTGTGGAAGGCTTGGTCTTTA
AAAAACATGCTGCTCACAAGCACATGCCCACTAAGTACAAGAACCCAAGGTTGTTACTGATCCGAGGTGTGCTTGGTCACTCTTCGAGTGTATTGTCATC
ATTTAAATCAATGGAGCAGGAAAAGGATAATCTGAAGTCTCTCGTTGAGACCATAGAAATGTGCCATCCAAATGTAGTTTTAGTAGAAAAATCTGTTTCT
CGTGATGTCCAAGAGTCCATCCTAGCTAAAGGAATCACATTGATCTACGACGTGAAGCTCCATCGTCTAAAAAGGATCGCACGCTGTACTGGTTCACCGA
TTTTATCATCTGATGCTTTGATTAGTCAGAAGTTAAAGCATTGTGACTCCTTTCATATCGAGAGATTTGTGGAGGAACATGCAGGGGTAGGCGAAGGAGG
AAAGAAGCCAAGTAAGACATTGATGTTCATTGAGGGCTGTCCGACACATTTGGGTTGTACAATTTTGTTGAAAGGAAGTCACAGTGATGAGTTGAAGAGG
GTTAAATATGTGACCCAGTTTGCAGTAGTAATTGCATATCACTTGATTCTGGAGACTTCGTTTCTTGTTGATTGGAAGACAATGTTTTCTTCAGCAGTAT
TTGCTGGAGTAGCCAGCAACTCATCAAGAGATCTGCAGTCTTCTGTTTTAGGAACTAGTATTCCTAGTATTGAGGAGTCTACAACTGAAACTGGTTCATC
TACCATTGATATTCCCATTTGTAATGGATTTCATGAAGAAGGTTTCCACAATATAAATATAGGATTAGAGGGATATAATCCTGCCATTCTTTCTGGATTT
TCCTCCCTTTCAGCCTCTCTGAAGAAAGTTGCTGGGGACAGCTTACCTCTTGTCTCCTCTTCTCCTCATCAGTCTTTATCTAATTACGTTGGCTTCAATG
GAAAAGAAATTAATGGTCAAATCTCGGAAGAGGTTCCAGTTTTAAAAACTGTGGAAGCTTCTGACCTCTATGATATGGAAGGTAAAAAAGGTTCTGACAA
AGAGAAGACAGTTGATGATGGATATCCTCAATCTTTGTCTCCTTGCTCCGAAGCCTCTCTGGACAGAGTAAAAGATGTCAACTATAATGAAGATCAAATC
CAAAGTGAGGGTGATGTCAATGCAGTGTTGGATTCTCAGAGTATTTTGGTTTTGATGTCAAGACGGAATGCCTTAAGAGGGACTGTATGTGAGCAAAGCC
ATTTTTCTCATATAATGTTCTACAAGAATTTTGATGTTCCCCTCGGAAAGTTTCTTCGGGATAATTTACTCAATCAGAGAAGCCAGTGCAACACTTGCGG
TGAATTGCCGGAAGCACACTTTTACTATTATGCTCATCATAATAAGCAGCTTACCATACAAGTTAAAAGGCTTCTGAAGATTTTGCCTGGAGAAGCAGAA
GGAAAACTTTGGATGTGGATTCGCTGTGGTAAATGTAAACATGAAAGCAAATTCCCAAAATCTACTAAACGAGTCTTGATTTCAACTGCTGCATGTAGCC
TTTCCTTGGGAAAATTCTTGGAGCTGAGCTTTTCCCACCAATTTTCATCTGGAATTTTATTTAGCTGTGGCCATTCACTGGAGAGAGACTTCCTCTACTT
CTTTGGACTGGGTCCTTTGGCAGCAATGTTTAAATACTCTCCAGTGACAACCTATACTTTGTCTCTCCCACCTCAGAAGCTGGAGTTCCATACAATCAGG
CCTGATGGCCCCAAGCAAGAATTTCATGATGTTTATGTAAGAGGGATGTTACTCTTCAATGGGGTTGGTGAGACTTTGAAGAATTTAAGATCTCGATTTG
CAGGGTCAGTTCTGAATCTTCAAGGTTCATTGAAAGAATTCTCTGATATTGAAGATATGTTGAAGCAGGAGAGTTCTGAGTTCGAGAAAGCTGTTGTTAA
AAATAGGGATGAGGCTGTTTATAAGCTTCTTAGCTTGAATCAATTATTGTGGGAGCTTCTTCTTGAATCATGCATCTGGGAAAGACGTCTGCAGTCATTG
CTCTCACCTGATCCTTCAGTGCTAGTGACTGGTGCCAGTGAGAAAGAAGTGCAGGACCGGTTTGAGTCACAGATGACTGGCACTGCTGATGGAAGAAACC
ATGGGAATGATACTAGCAGTGATAAAGTTTATGAAAACAGTGGCAAATTGAGGGATACACTCAGTACAACTGTTAGAGCAAGTGAATTTTCAATAAAAGA
AATTCCAGTTGATGGTCACGATCATGAATCTAGGGAACATGATAATCTTTACACCTCACCTACCGTGGCTGAGGATATTGAGAGGTCAAGAGTGAGTAGT
CTGAGCCAGAACAGGTTTTTCAACCAAGAACTATTTGTGAAACCTAGTGACTCTGCCCACCAGCATTCTGATGATGGAAATTGCCAAGCAGACTATTTTT
CTGATATACAAGTTGAAAGAACCATTCCAATTGTGACTAGTATAGGGATGAGTGATTCTTTTGTTGATTCTGATTCATCTAAAAAGGGTACGTCTGCACG
TTCTCTAGCATTCAGCTTAGAGAACTCAAATGGATGGTTCTGGATGCCATTTTCAGAAATCCGACGGATCTACATGAAGGATCTTCAGAGAGGTTTCATG
CCAAAATTTCAGCCGATCAGTAGCTATATTCAGGAACACGTATCTGCAGCTTATCAGCTAATCATGGAGGAAGGACAGAGGCTGCACATCCCTGTTGGAA
CTGATAATTATATGGTGAGAGACTACGATGGTGAACTCTCTAGCATAATTGCTTGTGCACTGGCATTTTTAGAAGATCAACCTGTTTCAACAGAGCTTTA
CAACGAGGATGGTAGGAAAGAGGGTGGCATGTCTTTTAAATCAACTGATAGTTTAGACATACTGACTCGAATTCCTACAATGATCTCCCCACGTTGGTCT
TCTAACGGTTCTGATTCAGATTCTGTTCATTCTAAACTAAATATTTCTTTGGAAGAGTCACACTTGTCCAGCTTTGATGGGTTAAATTTATTGGAAGCTG
TGGTTCCTCCAGCAAATCTCAGCCCTGAAGTCTCTCTTGCGGTATCAAAATCATTTGGAAAGGGTAAATACTCTGTAATTTGTCTATACGCTAAGCAGTT
CCGTGATCTTCGGAATCGATGTTGTCCATCTGAACTTGATTATATAGCTTCCCTCAGTCGTTGTAAGAAATGGGATGCAAAAGGTGGAAAGAGCAATTCC
TTTTTTGCAAAGACACTGGATGACAGATTTATCATAAAGGAAATTAAGAGGACAGAATTTGAGTCATTTGTGAAGTTTGCTCCACATTATTTCAAATACA
TGAACGAGTCATTTGAGTTAGGAAACCAAACTTGTCTTGCAAAAGTTCTGGGGATTTATCAGGTGATCACTAGACAAACCAAAAGTGGGAAAGAGATAAA
GCATGATCTGATGGTCATGGAGAATCTTACCTTTGGTCGAAACATCACTCGCCAGTATGATCTTAAGGGAGCTTTACATGCTAGATACAATTCAGCTGCT
GATGGTGCAGGAGATGTTCTTTTGGATAAAAACTTTGTTGACGACATGAATTCCTCTCCACTATACGTCAGTAATACATCAAAGTATCTCTTGGAACGTG
CTGTTTGGAATGACACCACCTTTCTTAATTCAATTAATGTTATGGATTATTCTTTACTTGTGGGAGTAGACACCCAGCGACGAGAACTTGTGTGTGGGAT
TATTGATTATCTCAGGCAGTATACCTGGGACAAGCAGCTGGAAACATGGGTGAAGTCTTCCCTTGTTGTTCCTAAAAATGTGTTGCCAACTGTAATATCT
CCTATAGAGTACAAGAAGAGGTTCAGAAAGTTCATGACTGTGCACTTCTTGAGTGTTCCCGATAACTGGTGCTCACAGAGTTCCTCTAACCCTTGTGAAC
TCTGTGGCGCTGGAGAAGATGGTTCATCACAATCCAAGTCCCAAAAACAAGGGCAAAATGGGCATACTCATTAG
AA sequence
>Potri.013G116400.2 pacid=42812649 polypeptide=Potri.013G116400.2.p locus=Potri.013G116400 ID=Potri.013G116400.2.v4.1 annot-version=v4.1
MCSMCHYCGADQAKLKDEKQKLENGDSLKLNGEEPIWSCQFCQEKQEPELMNHDGLSHSVSPMISPSTSLSISDRSISSCSDLSVDVNSHDRAHQEEGTV
HSAQKDLGYGVNDQQHNTRLEAPVNRVDGLHKVTGKDSHNGSDRDTVRDVEIVELVNDQESEGNSSANSVGFSNEGNDISQISDDEVDARVWEPPEAEDP
EDDLDGGVAFIDDDEECGDGTKWGKPSSLSCWRGEGSQSFKFKEEKQKAMEEVVNGKFKAIVSQLLKTAGVACVVRDGESWVDIVTSLSWEAASFLKPEA
VDGKAMDLDGYVKVKCIATGSRSESQVVEGLVFKKHAAHKHMPTKYKNPRLLLIRGVLGHSSSVLSSFKSMEQEKDNLKSLVETIEMCHPNVVLVEKSVS
RDVQESILAKGITLIYDVKLHRLKRIARCTGSPILSSDALISQKLKHCDSFHIERFVEEHAGVGEGGKKPSKTLMFIEGCPTHLGCTILLKGSHSDELKR
VKYVTQFAVVIAYHLILETSFLVDWKTMFSSAVFAGVASNSSRDLQSSVLGTSIPSIEESTTETGSSTIDIPICNGFHEEGFHNINIGLEGYNPAILSGF
SSLSASLKKVAGDSLPLVSSSPHQSLSNYVGFNGKEINGQISEEVPVLKTVEASDLYDMEGKKGSDKEKTVDDGYPQSLSPCSEASLDRVKDVNYNEDQI
QSEGDVNAVLDSQSILVLMSRRNALRGTVCEQSHFSHIMFYKNFDVPLGKFLRDNLLNQRSQCNTCGELPEAHFYYYAHHNKQLTIQVKRLLKILPGEAE
GKLWMWIRCGKCKHESKFPKSTKRVLISTAACSLSLGKFLELSFSHQFSSGILFSCGHSLERDFLYFFGLGPLAAMFKYSPVTTYTLSLPPQKLEFHTIR
PDGPKQEFHDVYVRGMLLFNGVGETLKNLRSRFAGSVLNLQGSLKEFSDIEDMLKQESSEFEKAVVKNRDEAVYKLLSLNQLLWELLLESCIWERRLQSL
LSPDPSVLVTGASEKEVQDRFESQMTGTADGRNHGNDTSSDKVYENSGKLRDTLSTTVRASEFSIKEIPVDGHDHESREHDNLYTSPTVAEDIERSRVSS
LSQNRFFNQELFVKPSDSAHQHSDDGNCQADYFSDIQVERTIPIVTSIGMSDSFVDSDSSKKGTSARSLAFSLENSNGWFWMPFSEIRRIYMKDLQRGFM
PKFQPISSYIQEHVSAAYQLIMEEGQRLHIPVGTDNYMVRDYDGELSSIIACALAFLEDQPVSTELYNEDGRKEGGMSFKSTDSLDILTRIPTMISPRWS
SNGSDSDSVHSKLNISLEESHLSSFDGLNLLEAVVPPANLSPEVSLAVSKSFGKGKYSVICLYAKQFRDLRNRCCPSELDYIASLSRCKKWDAKGGKSNS
FFAKTLDDRFIIKEIKRTEFESFVKFAPHYFKYMNESFELGNQTCLAKVLGIYQVITRQTKSGKEIKHDLMVMENLTFGRNITRQYDLKGALHARYNSAA
DGAGDVLLDKNFVDDMNSSPLYVSNTSKYLLERAVWNDTTFLNSINVMDYSLLVGVDTQRRELVCGIIDYLRQYTWDKQLETWVKSSLVVPKNVLPTVIS
PIEYKKRFRKFMTVHFLSVPDNWCSQSSSNPCELCGAGEDGSSQSKSQKQGQNGHTH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G34260 FAB1D FORMS APLOID AND BINUCLEATE CE... Potri.013G116400 0 1
AT3G22550 Protein of unknown function (D... Potri.005G211500 4.24 0.7555
AT4G24400 ATCIPK8, PKS11,... SNF1-RELATED PROTEIN KINASE 3.... Potri.002G109000 4.89 0.7700
AT3G55760 unknown protein Potri.008G159500 5.83 0.7872
AT2G46550 unknown protein Potri.002G173200 6.00 0.7812
AT5G35180 Protein of unknown function (D... Potri.018G113100 11.22 0.7068
AT2G30090 Acyl-CoA N-acyltransferases (N... Potri.009G074200 11.40 0.7421
AT3G53810 Concanavalin A-like lectin pro... Potri.009G035701 17.32 0.7316
AT3G29320 PHS1 alpha-glucan phosphorylase 1, ... Potri.004G123600 22.62 0.7170 PHO1.2
AT2G23210 UDP-Glycosyltransferase superf... Potri.009G095550 23.49 0.7492
AT1G67360 Rubber elongation factor prote... Potri.003G173100 23.97 0.7261

Potri.013G116400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.