Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71840 472 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 112 / 6e-28 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 105 / 2e-25 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 96 / 3e-21 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 95 / 9e-21 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 94 / 1e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 92 / 2e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 92 / 5e-20 WD-40 repeat family protein / notchless protein, putative (.1) AT5G23430 92 / 7e-20 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G41500 90 / 2e-19 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G087200 [exp] 612 / 0 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 115 / 2e-29 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 110 / 2e-27 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 101 / 6e-24 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 103 / 8e-24 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 100 / 2e-22 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 96 / 3e-21 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.006G263400 [exp] 92 / 4e-20 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.018G020200 [exp] 91 / 2e-19 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031629 [exp] 462 / 2e-162 AT1G71840 488 / 2e-172 transducin family protein / WD-40 repeat family protein (.1) Lus10033710 [exp] 466 / 8e-158 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10032994 [exp] 378 / 3e-130 AT1G71840 415 / 8e-145 transducin family protein / WD-40 repeat family protein (.1) Lus10014674 [exp] 115 / 4e-29 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 115 / 7e-29 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 108 / 1e-26 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 106 / 1e-25 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 101 / 7e-23 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039597 [exp] 99 / 2e-22 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10029493 [exp] 99 / 2e-22 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.013G116900.1 pacid=42812666 polypeptide=Potri.013G116900.1.p locus=Potri.013G116900 ID=Potri.013G116900.1.v4.1 annot-version=v4.1 ATGAACGGTCCAAATCGATCATTTAACGACGACGACGACGAAGACGATCAAGGCGAAGTTTTCCTTGATGATTCCGATATCATCCACGAAGTCACCGTCG ATGAAGAAGACCTTCCTGATGCGGATGACGACGACAACGACGACACGGATGATTCTATGCACATATTTACCGGTCATACCAGTGAACTCTATACAGTTGC CTGCAGTCCAGCAGACCCTTTGCTAGTGGCGACTGGTGGAGGAGATGACAAAGGGTTTCTTTGGAAGATTGGTCTTGGAGATTGGGCTGCTGAGCTCAAA GGTCATAAGGAATCTGTGTCTAGTTTAACATTTAGTAGTGATGGACAGTTGCTTGCATCTGGAGGGTTTGATGGGATTGTCCAAATTTGGGATGCTTCGT CGGGAAACCTTAAATGTGTACTCGAAGGTCCTGATGAGGGCATTGAGTGGGTCAGATGGCATCCAAAAGGGCATCTGGTGTTGGCTGGTTCCGAGGACAA AACTGTTTGGATGTGGAATGCTGACAAAGGTGCCTATCTTAATTCATTTGCAGGACATGAAGCAAGTGTTACCTGTGGTGATTTTACTCCTGATGGTAAA ACAATCTGTACTGGTTCTGATGATGCATCCTTGAGGATATGGAATCCTAAAAGTGGTGAAAACATACATGTTGTGAGAGGTCATCCATATCACACTGATG GACTGACGTGCTTGGCATTGAGCTCAGATTCTACTCTTGCTATTACTGGTTCAAAGGACAACTCCGTCCACATCGTGAACATTACTACTGGCAGGTGTCT TTGGTTCTTTGACATGTTGTGCATTGGCATGCTCCTTTTAAGCCTTTTTTCCGGGTCTTTATTGAGCTCCCCTTGGGCTGCTACAGGAGGCTTGGATCAA AAGCTTATCATCTGGGACCTGCAGCATTCTTTGCCCCGTGCCTCATGTGAACACAAGGATGGAGTTACATGTCTGGCATGGCTTGGTGCATCAAGATACG TGGCTACAGGTTGTGTGGATGGGAAAGTAAGACTGTGGGATAGTCTCTCTGGTGATTGCATAAGAATATTTAGTGGCCACGCTGATGCCGTTCAATCCCT GTCTATATCTGCTAATCAAGATTATCTTGTCTCGGGTTCAAGTGATGGAACCGCAAGAGTGTTTGAGATTGCAGAGTTTAAGTAA
AA sequence Show only first row Show all	>Potri.013G116900.1 pacid=42812666 polypeptide=Potri.013G116900.1.p locus=Potri.013G116900 ID=Potri.013G116900.1.v4.1 annot-version=v4.1 MNGPNRSFNDDDDEDDQGEVFLDDSDIIHEVTVDEEDLPDADDDDNDDTDDSMHIFTGHTSELYTVACSPADPLLVATGGGDDKGFLWKIGLGDWAAELK GHKESVSSLTFSSDGQLLASGGFDGIVQIWDASSGNLKCVLEGPDEGIEWVRWHPKGHLVLAGSEDKTVWMWNADKGAYLNSFAGHEASVTCGDFTPDGK TICTGSDDASLRIWNPKSGENIHVVRGHPYHTDGLTCLALSSDSTLAITGSKDNSVHIVNITTGRCLWFFDMLCIGMLLLSLFSGSLLSSPWAATGGLDQ KLIIWDLQHSLPRASCEHKDGVTCLAWLGASRYVATGCVDGKVRLWDSLSGDCIRIFSGHADAVQSLSISANQDYLVSGSSDGTARVFEIAEFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71840			transducin family protein / WD...		Potri.013G116900 [exp]	0	1
AT1G10417			unknown protein		Potri.008G190600 [exp]	1.73	0.9331
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Potri.001G448800 [exp]	2.00	0.9532
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Potri.001G177700 [exp]	2.44	0.9207
AT4G31060	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G080300 [exp]	4.79	0.8922
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Potri.012G068550 [exp]	5.65	0.9118
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187401 [exp]	7.00	0.8750
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.001G001250 [exp]	7.28	0.8739
AT5G06220			LETM1-like protein (.1.2)		Potri.001G187100 [exp]	9.79	0.8907
					Potri.007G010000 [exp]	9.89	0.9175
AT5G44010			unknown protein		Potri.014G192200 [exp]	10.95	0.9086

Compare expression of checked genes

Potri.013G116900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.