Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09650 248 / 7e-83 PDE332, ATPD PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1) AT5G13450 51 / 2e-07 ATP5 delta subunit of Mt ATP synthase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G087300 [exp] 350 / 6e-123 AT4G09650 227 / 9e-75 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1) Potri.014G102100 [exp] 80 / 1e-17 AT4G09650 90 / 3e-21 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012452 [exp] 239 / 2e-79 AT4G09650 250 / 5e-84 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1) Lus10020508 [exp] 239 / 4e-79 AT4G09650 248 / 5e-83 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1) Lus10012618 [exp] 66 / 2e-12 AT4G00895 83 / 2e-19 ATPase, F1 complex, OSCP/delta subunit protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0255 [poplar] [flax] ATP_synthase PF00213 [poplar] [flax] OSCP ATP synthase delta (OSCP) subunit
Representative CDS sequence Show only first row Show all	>Potri.013G117000.1 pacid=42811837 polypeptide=Potri.013G117000.1.p locus=Potri.013G117000 ID=Potri.013G117000.1.v4.1 annot-version=v4.1 ATGGCATCAGCACTCCAAAATGCCGCCGTTTCACTCCAATCCAAAATCCCACCATCAGCCAGGCTGCCAACAAACTTCACCTCCCCGAAACCTCTCAACC TCTCCTTCTCCGCCACTTTCCCTTCCCTCAACCTCTCCACCACAACCACCCTCCGCCTCCGTGGTGGCTCGGCCTTGGGGACCAAAATGTCAGCAGCAGC AGCGGGAAGTTACGCTGCAGCGCTAGCTGACGTGGCAAAATCCAACAACACATTAGATGCTACCTCGTCTGACATGGGCAAAGTAGACAAACTTTTTTCA GACACAGCAGTCTATGACTTCTTTGCTAACCCGACAGTAGACACAGAAAAGAAACGACAAATGGTTGATGAGTTTGCCAAGTCCTCACCTCTCCAACCCC ATACAGTAAACTTCGTTAATATACTTATAGATGCAAAGAGGATTGATTTGGTTAAAGATATAGTGAAAGAATTTGAGATGGTTTACAATAGCTTGACAGA TACAGAGCTTGCTGTGGTGAGTTCAGTGGTGCCTTTGGAGTCGCAACATTTGGCACAGATAGCAAAACAAGTGCAGAAACTGACAGGAGCTAAGAATGTA AGGGTTAAGCCAGTGATTGACCCCAGTTTGGTTGCTGGGTTTACTGTAAGGTATGGAAATTCAGGGTCCAAGTTGATTGATATGAGTGTGAAGAAACAGT TGGAGGAGATTGCTGCTCAGCTTGATTTAAGTGATATTGAACTTGCTGCTTAA
AA sequence Show only first row Show all	>Potri.013G117000.1 pacid=42811837 polypeptide=Potri.013G117000.1.p locus=Potri.013G117000 ID=Potri.013G117000.1.v4.1 annot-version=v4.1 MASALQNAAVSLQSKIPPSARLPTNFTSPKPLNLSFSATFPSLNLSTTTTLRLRGGSALGTKMSAAAAGSYAAALADVAKSNNTLDATSSDMGKVDKLFS DTAVYDFFANPTVDTEKKRQMVDEFAKSSPLQPHTVNFVNILIDAKRIDLVKDIVKEFEMVYNSLTDTELAVVSSVVPLESQHLAQIAKQVQKLTGAKNV RVKPVIDPSLVAGFTVRYGNSGSKLIDMSVKKQLEEIAAQLDLSDIELAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Potri.013G117000 [exp]	0	1
AT5G07020			proline-rich family protein (....		Potri.003G192800 [exp]	1.00	0.9913
AT1G32060		PRK	phosphoribulokinase (.1)		Potri.003G099400 [exp]	2.00	0.9886
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Potri.008G181900 [exp]	2.44	0.9857	PSBY.1
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Potri.001G110200 [exp]	4.00	0.9840
AT1G26220			Acyl-CoA N-acyltransferases (N...		Potri.008G113600 [exp]	7.74	0.9799
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Potri.010G215900 [exp]	8.06	0.9833
AT5G64480			unknown protein		Potri.001G286200 [exp]	8.83	0.9739
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Potri.002G033300 [exp]	10.00	0.9767
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Potri.013G039400 [exp]	10.09	0.9610
AT3G26070			Plastid-lipid associated prote...		Potri.001G209600 [exp]	10.81	0.9769

Compare expression of checked genes

Potri.013G117000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.