Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SERK2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34210 1013 / 0 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT1G71830 1001 / 0 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT4G33430 849 / 0 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 610 / 0 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 572 / 0 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT3G25560 563 / 0 NIK2 NSP-interacting kinase 2 (.1.2.3) AT1G60800 549 / 0 NIK3 NSP-interacting kinase 3 (.1) AT5G45780 481 / 2e-163 Leucine-rich repeat protein kinase family protein (.1) AT5G65240 478 / 2e-162 Leucine-rich repeat protein kinase family protein (.1.2) AT5G10290 474 / 7e-161 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G087700 [exp] 1063 / 0 AT1G34210 1012 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 985 / 0 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 982 / 0 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.001G206700 [exp] 882 / 0 AT4G33430 927 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.003G023000 [exp] 648 / 0 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.008G188800 [exp] 583 / 0 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1) Potri.010G043200 [exp] 580 / 0 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.004G108200 [exp] 578 / 0 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.006G179400 [exp] 540 / 0 AT2G23950 889 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028716 [exp] 930 / 0 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10006057 [exp] 928 / 0 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10020962 [exp] 877 / 0 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10006056 [exp] 717 / 0 AT1G71830 731 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10028715 [exp] 700 / 0 AT1G71830 748 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10030898 [exp] 550 / 0 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10030591 [exp] 548 / 0 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10023146 [exp] 485 / 1e-167 AT5G10290 680 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10000629 [exp] 484 / 1e-164 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10025358 [exp] 468 / 3e-163 AT4G33430 500 / 2e-176 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.013G117200.1 pacid=42811030 polypeptide=Potri.013G117200.1.p locus=Potri.013G117200 ID=Potri.013G117200.1.v4.1 annot-version=v4.1 ATGGAGAGGAAAGTTGGGAACTTTCTTTTTGTGTGGTTGTTGATCTTGGCGTTGCTGCTGCATCCAGTATGGCTGGTTTTGGGTAATATGGAAGGTGATG CTTTGCATAGCCTGAGGAGCAATTTGAATGATCCAAACAATGTCCTGCAGAGTTGGGATCCTACCCTTGTCAACCCATGCACGTGGTTTCATGTCACCTG TAACAATGATAATAGTGTTATAAGAGTTGATCTTGGAAATGCTGCTTTATCTGGTCAGCTTGTTCCACAGCTTGGCCTGCTTAAGAACTTGCAATACTTG GAACTCTACAGTAATAACATAAGCGGACCAATTCCTGGTGATCTTGGAAATTTGACTACCCTGGTGAGCTTGGATCTTTACTTGAATAGTTTTACTGGTC CCATTCCAGACACTTTGGGCAAGCTGTCAAAATTGCGATTCCTTCGGCTTAATAACAATAGTTTGACGGGGCCAATTCCAATGTCATTGACTAATATCTC AGCTCTTCAAGTACTGGATCTTTCAAACAACCGCCTCTCTGGAGTGGTTCCAGATAATGGTTCCTTTTCACTATTCACTCCCATAAGTTTTGCTAACAAC TTGGATCTGTGTGGACCAGTTACTGGTCATCCCTGCCCAGGGTCTCCTCCATTTTCTCCCCCTCCTCCATTTGTCCCACCACCTCCAATTTCTTCACCAG GAGGGTATAGTGCCACTGGAGCAATTGCTGGAGGAGTTGCAGCTGGTGCAGCCTTACTGTTTGCTGCCCCAGCATTGGCATTTGCTTGGTGGCGTCGGAG GAAACCTCAAGAGTTCTTCTTTGATGTGCCTGCTGAAGAGGATCCTGAAGTTCATCTAGGACAGCTTAAAAGGTTTTCTCTGAGAGAATTACAAGTTGCA ACGGATACCTTTAGCAACAAAAATATTCTGGGTAGAGGAGGGTTTGGTAAGGTTTACAAAGGACGTCTAGCAGATGGCTCGCTGGTGGCTGTAAAAAGAC TTAAAGAAGAGCGTACGCCTGGAGGGGAGCTACAGTTTCAAACAGAAGTAGAGATGATAAGCATGGCTGTGCATCGGAATCTCCTCCGGTTACGTGGCTT TTGCATGACACCAACTGAAAGACTGCTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCATCATGTTTGAGGGAACGCCCACCTTCACAGCCTCCTCTA GATTGGCCAACGCGAAAGCGAATTGCGTTGGGATCTGCAAGGGGTTTATCTTATTTGCATGATCATTGTGACCCAAAGATTATTCATCGGGATGTTAAAG CTGCAAATATTTTGTTGGACGAGGAATTCGAGGCTGTTGTTGGGGATTTTGGGCTGGCAAAATTGATGGACTACAAGGATACTCATGTCACCACTGCTGT CCGTGGTACAATAGGACACATTGCTCCAGAGTACCTATCTACTGGTAAATCATCTGAGAAAACTGATGTTTTTGGGTATGGAATCATGCTTCTGGAGCTA ATTACTGGACAGAGGGCTTTTGACCTTGCCCGGCTGGCAAATGATGACGATGTCATGTTACTTGATTGGGTAAAAGGACTTCTCAAGGAGAAAAAGCTAG AAATGCTAGTCGATCCTGATCTCCAAAACAAATATGTGGAAGCTGAGGTGGAGCAACTAATCCAGGTTGCCCTGCTCTGCACTCAAGGCTCCCCAATGGA GCGGCCTAAGATGTCGGATGTGGTGAGAATGCTTGAAGGTGATGGTTTGGCAGAGAGATGGGATGAGTGGCAAAAGGTTGAAGTTCTACGTCAGGAGGTG GAATTAGCTCCTCATCCTAATTCTGACTGGATTGTTGACTCCACAGAAAATCTACATGCAGTCGAATTATCTGGTCCGAGGTGA
AA sequence Show only first row Show all	>Potri.013G117200.1 pacid=42811030 polypeptide=Potri.013G117200.1.p locus=Potri.013G117200 ID=Potri.013G117200.1.v4.1 annot-version=v4.1 MERKVGNFLFVWLLILALLLHPVWLVLGNMEGDALHSLRSNLNDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGLLKNLQYL ELYSNNISGPIPGDLGNLTTLVSLDLYLNSFTGPIPDTLGKLSKLRFLRLNNNSLTGPIPMSLTNISALQVLDLSNNRLSGVVPDNGSFSLFTPISFANN LDLCGPVTGHPCPGSPPFSPPPPFVPPPPISSPGGYSATGAIAGGVAAGAALLFAAPALAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVA TDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPL DWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLEL ITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNKYVEAEVEQLIQVALLCTQGSPMERPKMSDVVRMLEGDGLAERWDEWQKVEVLRQEV ELAPHPNSDWIVDSTENLHAVELSGPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.013G117200 [exp]	0	1	Pt-SERK2.2
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.019G087700 [exp]	1.00	0.8579	Pt-SERK2.3
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Potri.010G065200 [exp]	5.47	0.8159
AT1G03520			Core-2/I-branching beta-1,6-N-...		Potri.013G145500 [exp]	6.00	0.8173
AT3G13060		ECT5	evolutionarily conserved C-ter...		Potri.001G056100 [exp]	6.92	0.8083
AT3G61650		TUBG1	gamma-tubulin (.1)		Potri.014G094900 [exp]	8.06	0.8257	Pt-TUBG1.1,TUBG1
AT2G29400		PP1-AT, TOPP1	type one protein phosphatase 1...		Potri.001G245700 [exp]	9.27	0.8543	TOPP1.2
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.009G089800 [exp]	14.42	0.8438
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.011G146700 [exp]	16.70	0.8515
AT1G08350			Endomembrane protein 70 protei...		Potri.004G203200 [exp]	18.00	0.7953
AT5G16720			Protein of unknown function, D...		Potri.004G087600 [exp]	19.62	0.7905

Compare expression of checked genes

Potri.013G117200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.