Plant FIBer expression Database

Potri.013G117300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G087800
[exp]
47 / 8e-08 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.013G117300.1 pacid=42812578 polypeptide=Potri.013G117300.1.p locus=Potri.013G117300 ID=Potri.013G117300.1.v4.1 annot-version=v4.1
ATGGGTTCCTATCTCTCTTCCTTCTTTATTGAAGCTCATAATGCTCTTCTACAGTTCTTGGGACTGGTTATTGTTGATCATCAAAGTAAGACCCAAGAAG
GCTCGTCAACTTCCAGTTCAGAGAAACAAGAGGATGAAAAAGCCTCTGAAGAAAGCTCCCAAGATCCTCCTCCAACAACAACCGACCCAAAAGCTGATCC
TCCCACAGATAACTCTGAAGATCCTCCTGCAGTCACTGTAAGTGCTCTTGCGAGGCGGACTCCACCAGTAAGCAGCGGGAGCGGTGGTCAGATTAATTAA
AA sequence
>Potri.013G117300.1 pacid=42812578 polypeptide=Potri.013G117300.1.p locus=Potri.013G117300 ID=Potri.013G117300.1.v4.1 annot-version=v4.1
MGSYLSSFFIEAHNALLQFLGLVIVDHQSKTQEGSSTSSSEKQEDEKASEESSQDPPPTTTDPKADPPTDNSEDPPAVTVSALARRTPPVSSGSGGQIN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.013G117300
[exp]
0 1
AT1G08080 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANH... Potri.006G121900
[exp]
1.41 0.9774
AT5G15130 WRKY ATWRKY72, WRKY7... ARABIDOPSIS THALIANA WRKY DNA-... Potri.017G079500
[exp]
2.23 0.9818 Pt-WRKY72.1
AT2G15490 UGT73B4 UDP-glycosyltransferase 73B4 (... Potri.006G272600
[exp]
4.47 0.9724
Potri.001G019890
[exp]
5.91 0.9720
AT5G06490 RING/U-box superfamily protein... Potri.010G243500
[exp]
6.00 0.9709
AT1G07160 Protein phosphatase 2C family ... Potri.019G071600
[exp]
6.92 0.9679
AT2G37740 C2H2ZnF ATZFP10, ZFP10 zinc-finger protein 10 (.1) Potri.006G089600
[exp]
7.00 0.9689 RBE.2
AT3G47780 ABCA7, ATATH6 A. THALIANA ABC2 HOMOLOG 6, AT... Potri.015G063400
[exp]
7.41 0.9599 Pt-ATH2.2
AT3G05390 unknown protein Potri.004G083800
[exp]
12.64 0.9537
AT2G26710 CYP72B1, CYP734... PHYB ACTIVATION TAGGED SUPPRES... Potri.010G139400
[exp]
12.64 0.9609

Potri.013G117300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.