Plant FIBer expression Database

Potri.013G117400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71820 1345 / 0 SEC6 SEC6 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G088100
[exp]
1420 / 0 AT1G71820 1346 / 0.0 SEC6 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026982
[exp]
1316 / 0 AT1G71820 1331 / 0.0 SEC6 (.1.2)
Lus10020177
[exp]
1239 / 0 AT1G71820 1257 / 0.0 SEC6 (.1.2)
Lus10041100
[exp]
1204 / 0 AT1G71820 1221 / 0.0 SEC6 (.1.2)
Lus10036425
[exp]
127 / 1e-33 AT1G71820 123 / 5e-33 SEC6 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0295 Vps51 PF06046 Sec6 Exocyst complex component Sec6
Representative CDS sequence
>Potri.013G117400.1 pacid=42811797 polypeptide=Potri.013G117400.1.p locus=Potri.013G117400 ID=Potri.013G117400.1.v4.1 annot-version=v4.1
ATGATGGCGGAGGATCTGGGCATCGAAGCGAAAGAAACCGCCGTGCGTGAGGTGGCGAAGCTGTTACCGCTTCCAGAACTCTTGCAATCCATTGTTTCTA
TCAAAACCGATTACATTACCCGCCAACAAGCTAATGACGCGCAACTTAGTACAATGGTAGCAGAGCAGGTGGAACAAGCACAATCTGGATTGGAATCGCT
GTCCTTGTCGCATAAGACGATAAATCAGCTACGAGAGAACTTCATTTCTATTGAAAAGTTATGTCAAGAATGTCAAACTTTGATTGAGAATCATGATCAG
ATAAAGCTACTTAGCAATGCAAGGAATAATCTAAATACTACCTTGAAGGATGTTGAGGGTATGATGTCAATATCTGTTGAAGCAGCAGAGGCACAGGATT
CGTTGAGTGATGATAGAGAAATTGTTAATACGTACGAGAGATTAACTGCACTTGATGGGAAGCGAAGGTTTGCATTAGCAGCTGCTGCATCTCACAAAGA
GGAGGTTGGAAGATTAAGAGAATATTTCGAAGACGTAGATCGGACATGGGAAACCTTTGAGAAGACTTTATGGGGACACGTTTCCAACTTCTTTAAACTT
TCTAAAGAGAGCCCACAAACACTGGTTCGTGCTTTAAGGGTTGTCGAAATGCAAGAAATTCTTGATGAACAAGTTGCTGAGGAGGCAGCTGAGGCTGAGG
GAGGTGGTGCAATGGCAACTGTTGCAAATCCTCGCAGATCTTCCAAAAAATCCACCACCACAGCAGTTTCTTCCGAAAACCTCACGCAACAGAAGTTGAA
GATTCAGGGGAAAGGGTTTAAGGATAAATGCTATGAGCATATAAGAAAGTCAGTTGAAAGACGGTTCAACAAGCTACTAACAGAGCTTGTACTTGAAGAC
CTCAAAGCTGCCTTAGAAGAAGCTCGAACAATTGGTGAAGAGCTTGGTGATATTTATGACTATGTAGCCCCATGTTTTCCCCCAAGATATGAAATATTCC
AACTCATGGTAAACCTCTATACCGAGAGGTTTATTCAGATGCTCAGATTGTTGAGTGACAGGGCAAATGAGTTATCAAATATAGAGATTTTAAAGGTAAC
CGGTTGGGTGGTTGAATATCAAGATAATCTGGTTGGACTTGGCGTTGATGAGTCTCTTGCTCAAGTCTGTTCTGAGAGTGGTGCCATGGATCCCCTCATG
AATTCATATGTGGAGAGAATGCAAGCTACAACAAGGAAATGGTACTTAAATATCCTAGAAGCTGATAAGGTACAGCCACCAAAGAAAACAGATGATGGAA
AGCTATATACACCAGCTGCTGTTGATCTGTTTAGGATCCTTGGGGAGCAAGTTCAGATTGTTAGGGATAATAGCACAGATGTCATGCTATACAGGATTTC
TTTGGCTATAATTCAGGTGATGATAGATTTTCAAGCTTCTGAAAGGAAGAGGTTTCAGGAACCTGCTTCAGAAATTGGTTTGGAACCTTTTTGTGCAATG
ATAAATAACAATCTGCGATGCTATGACCTTGCAATGGAGTTGAGTAGCAGCACCATAGAAGCACTACCACAAAACTATGCTGAACAGGTTAATTTTGAAG
ATACTTGCAAAGGCTTCCTAGAGGTTGCGAAGGAAGCTGTGCATCTAACCGTTAGGGTTATCTTTGAAGATCCTGGAGTGCAGGAGTTAATTGTCAAGCT
TTATCATAAAGAGTGGTCTGAAGGACAGGTCACCGAGTACCTAGTTGCAACATTTGGTGATTATTTTGCAGATGTGAAGATGTATATTGAAGAAAGATCA
TTTAGGAGATTTGTTGAAGCTTGTCTTGAGGAGACAGTGGTGGTTTACGTGGATCACCTTCTGACTCAGAAAAACTACATCAAGGAAGAGACGATAGAAC
GGATGAGGCTAGATGAAGAGGTTATTATGGACTTCTTCAGGGAGTATATTAGCGTGTCTAAAGTAGAAAGTAGAGTCAGGATACTGAGTGATTTGAAAGA
ACTTGCTTCAGGAGAGAGTTTGGATACCTTCACGCTTATCTATATGAATATTCTTGAACATCAACCTGACTGCCCGCCCGAAGTAGTTGAAAAGCTTGTT
GGACTGCGAGAAGGCATACCACGAAAGGATGCGAAAGAGGTTGTACAAGAGTGCAAAGAGATTTATGAGAATTCACTTGTTGATGGAAACCCCGCGAAGG
CTGGTTTTCTCTTTCCAAAGTTGAAGTGCTTTGCAGCTTCCAAAGGATCTCTCTGGCGAAAGCTCACTTAA
AA sequence
>Potri.013G117400.1 pacid=42811797 polypeptide=Potri.013G117400.1.p locus=Potri.013G117400 ID=Potri.013G117400.1.v4.1 annot-version=v4.1
MMAEDLGIEAKETAVREVAKLLPLPELLQSIVSIKTDYITRQQANDAQLSTMVAEQVEQAQSGLESLSLSHKTINQLRENFISIEKLCQECQTLIENHDQ
IKLLSNARNNLNTTLKDVEGMMSISVEAAEAQDSLSDDREIVNTYERLTALDGKRRFALAAAASHKEEVGRLREYFEDVDRTWETFEKTLWGHVSNFFKL
SKESPQTLVRALRVVEMQEILDEQVAEEAAEAEGGGAMATVANPRRSSKKSTTTAVSSENLTQQKLKIQGKGFKDKCYEHIRKSVERRFNKLLTELVLED
LKAALEEARTIGEELGDIYDYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANELSNIEILKVTGWVVEYQDNLVGLGVDESLAQVCSESGAMDPLM
NSYVERMQATTRKWYLNILEADKVQPPKKTDDGKLYTPAAVDLFRILGEQVQIVRDNSTDVMLYRISLAIIQVMIDFQASERKRFQEPASEIGLEPFCAM
INNNLRCYDLAMELSSSTIEALPQNYAEQVNFEDTCKGFLEVAKEAVHLTVRVIFEDPGVQELIVKLYHKEWSEGQVTEYLVATFGDYFADVKMYIEERS
FRRFVEACLEETVVVYVDHLLTQKNYIKEETIERMRLDEEVIMDFFREYISVSKVESRVRILSDLKELASGESLDTFTLIYMNILEHQPDCPPEVVEKLV
GLREGIPRKDAKEVVQECKEIYENSLVDGNPAKAGFLFPKLKCFAASKGSLWRKLT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G71820 SEC6 SEC6 (.1.2) Potri.013G117400
[exp]
0 1
AT1G47380 Protein phosphatase 2C family ... Potri.014G031200
[exp]
3.16 0.6790
AT3G14620 CYP72A8 "cytochrome P450, family 72, s... Potri.011G117700
[exp]
15.32 0.6382 CYP72D2-1
AT1G44170 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, alde... Potri.005G179300
[exp]
25.23 0.6116 ALDH3.3
AT5G19330 ARIA ARM repeat protein interacting... Potri.002G052700
[exp]
30.72 0.6230
AT4G39350 ATH-A, CESA2, A... cellulose synthase A2 (.1) Potri.002G066600
[exp]
36.87 0.6071
AT1G57820 ORTH2, VIM1 VARIANT IN METHYLATION 1, ORTH... Potri.003G162400
[exp]
40.09 0.6310
AT4G09510 A/N-InvI, CINV2 alkaline/neutral invertase I, ... Potri.019G082000
[exp]
40.47 0.6095 Pt-INV1.2
AT2G06925 ATSPLA2-ALPHA, ... PHOSPHOLIPASE A2-ALPHA, Phosph... Potri.006G070400
[exp]
47.18 0.5512
AT2G35930 PUB23 plant U-box 23 (.1) Potri.014G101100
[exp]
49.30 0.6058
AT3G16950 PTLPD1, LPD1 lipoamide dehydrogenase 1 (.1.... Potri.008G107600
[exp]
61.96 0.5828

Potri.013G117400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.