Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56770 112 / 8e-30 bHLH bHLH107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G68810 109 / 1e-27 bHLH bHLH030 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G25710 105 / 2e-26 bHLH TMO5, BHLH32, bHLH032, ATAIG1 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) AT2G40200 98 / 3e-24 bHLH bHLH051 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G41130 96 / 2e-23 bHLH bHLH106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G38070 66 / 7e-12 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 62 / 1e-10 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G00050 62 / 1e-10 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46760 61 / 3e-10 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G17880 61 / 3e-10 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G089000 [exp] 426 / 2e-152 AT1G68810 122 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G055700 [exp] 198 / 9e-63 AT2G41130 120 / 1e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G065500 [exp] 184 / 4e-58 AT1G68810 113 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G037100 [exp] 115 / 8e-31 AT2G41130 229 / 2e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G130000 [exp] 114 / 1e-29 AT1G68810 269 / 1e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G186700 [exp] 112 / 1e-29 AT2G40200 132 / 3e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G070800 [exp] 112 / 1e-29 AT2G40200 132 / 2e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G035400 [exp] 111 / 2e-29 AT2G41130 231 / 2e-76 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G116000 [exp] 113 / 3e-29 AT1G68810 259 / 5e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038306 [exp] 247 / 5e-82 AT3G56770 102 / 2e-26 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10013917 [exp] 178 / 7e-55 AT2G40200 122 / 2e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001885 [exp] 169 / 3e-51 AT1G68810 124 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10036175 [exp] 162 / 7e-50 AT3G25710 75 / 3e-16 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10042017 [exp] 119 / 6e-32 AT2G41130 204 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018020 [exp] 117 / 2e-31 AT2G41130 206 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041493 [exp] 113 / 2e-29 AT3G25710 201 / 2e-62 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10034271 [exp] 112 / 5e-29 AT1G68810 218 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10035056 [exp] 110 / 8e-28 AT1G68810 321 / 6e-108 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021711 [exp] 109 / 2e-27 AT1G68810 310 / 1e-103 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.013G117600.1 pacid=42810786 polypeptide=Potri.013G117600.1.p locus=Potri.013G117600 ID=Potri.013G117600.1.v4.1 annot-version=v4.1 ATGGAACCTTGTTCTTGGAACTCAGCAAGGGTGCAAGCCTCTGCATGTGAGGGAATGAGTGATGTGTTTTTGGTGAATTCTGAGTTACAAGCCGAAACAA GAAACGGGTCACGTTCAACTTCATCTTTGGTTTTTGATAATGAAAGAGGAGAGCTTGTGGAGGCTACCGTGAGAATGGAGAGGAAAGGAGTGTCGGCTGA GAAAAGCATTGCTGCTTTAAGGAATCACAGTGAGGCTGAGAGGAAGCGTAGAGCCAGGATTAATGCACATCTTGACACACTTAGGAGCCTAGTACCTGGT ACTAGTAAGATGGACAAGGCATCATTGCTTGCTGAAGTTATAAGCCACCTGAAGGAGCTGAAGATCCAGGCAGCAGGAGCTGGTGAAGGCCTTCTCATGC CACTGGATATTGATGAAGTGAGAGTAGAACAGGAAGAGGATGGTTTGTGCAGTGCCCCATGTTTAATCAGGGCATCTATATGTTGCGATTACAAGCCTGA AATCTTGTCTGGTTTAAGACAAGCACTCGATGCTCTCCATCTGATGATAACGAGGGCAGAGATTGCGACTTTGGAGGGCAGGATGATGAACGTTCTTGTG ATGAGCAGCTGCAAAGAAGGGCTCGGTGGTGATAGCAAAGTACGCCAGTTTCTCGCCGGCTCCGTCCACAAGGCCTTTAGATCCGTACTTGACAAATTCT CTGCCTCGCAGGAATTCTCATTAAAACCCACGCTTTCGAATAAGAGGAGAAGGGTTGGTTTGTTGCAGCCGTTCTCATCATCTTCTTCTGGGGATCTCTG CAGTTGA
AA sequence Show only first row Show all	>Potri.013G117600.1 pacid=42810786 polypeptide=Potri.013G117600.1.p locus=Potri.013G117600 ID=Potri.013G117600.1.v4.1 annot-version=v4.1 MEPCSWNSARVQASACEGMSDVFLVNSELQAETRNGSRSTSSLVFDNERGELVEATVRMERKGVSAEKSIAALRNHSEAERKRRARINAHLDTLRSLVPG TSKMDKASLLAEVISHLKELKIQAAGAGEGLLMPLDIDEVRVEQEEDGLCSAPCLIRASICCDYKPEILSGLRQALDALHLMITRAEIATLEGRMMNVLV MSSCKEGLGGDSKVRQFLAGSVHKAFRSVLDKFSASQEFSLKPTLSNKRRRVGLLQPFSSSSSGDLCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56770	bHLH	bHLH107	basic helix-loop-helix (bHLH) ...		Potri.013G117600 [exp]	0	1
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Potri.017G088500 [exp]	1.00	0.9085
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Potri.010G082200 [exp]	8.66	0.8448
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Potri.013G107600 [exp]	10.09	0.8234
AT2G28680			RmlC-like cupins superfamily p...		Potri.007G047200 [exp]	18.00	0.7679
AT1G67260	TCP	TCP1	TCP family transcription facto...		Potri.017G112000 [exp]	18.49	0.8427
AT5G24318			O-Glycosyl hydrolases family 1...		Potri.012G017800 [exp]	19.02	0.8699
					Potri.001G381100 [exp]	22.84	0.8539
AT2G27140			HSP20-like chaperones superfam...		Potri.009G153000 [exp]	25.15	0.8603
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G021400 [exp]	27.12	0.8549	NFA903
AT5G50290			unknown protein		Potri.015G078700 [exp]	28.61	0.8538

Compare expression of checked genes

Potri.013G117600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.