Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrWBC10-1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53270 666 / 0 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT2G13610 532 / 0 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT5G52860 487 / 2e-166 ABCG8 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) AT4G25750 484 / 1e-165 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT5G19410 449 / 7e-151 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) AT3G55090 369 / 2e-118 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT3G55100 363 / 2e-117 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT3G55110 362 / 3e-116 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT2G37360 362 / 8e-116 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT3G53510 357 / 4e-114 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112100 [exp] 793 / 0 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 788 / 0 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.005G064300 [exp] 548 / 0 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 547 / 0 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.015G027600 [exp] 493 / 2e-168 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.009G070100 [exp] 474 / 2e-160 AT5G19410 707 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 372 / 7e-120 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 368 / 4e-118 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 365 / 7e-117 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029905 [exp] 486 / 8e-165 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10004496 [exp] 478 / 1e-161 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10027545 [exp] 474 / 8e-161 AT5G52860 781 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10000737 [exp] 474 / 2e-160 AT5G19410 754 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10017683 [exp] 459 / 8e-155 AT5G19410 731 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10033637 [exp] 461 / 1e-154 AT5G19410 735 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10008500 [exp] 444 / 1e-148 AT5G19410 758 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 374 / 4e-120 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 353 / 3e-112 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10017707 [exp] 295 / 5e-91 AT2G37360 456 / 6e-151 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.013G117700.1 pacid=42812234 polypeptide=Potri.013G117700.1.p locus=Potri.013G117700 ID=Potri.013G117700.1.v4.1 annot-version=v4.1 ATGGAACTACCAAGAATAGCTCCCAACTCTGGTAGTTTGAGAGCTCGATATATTATCGAGACGAAGAACCTTTCTTACAAGCTATGCGGTCAAATCGATG AATTAAACTGGCTTCTCTGGAAGAAAACGGCGGATGATAACGCGTACATTTTGAGGAAAGTGAATTGTGAAGCACGACCTGGGGAGATAATGGCAATTGC TGGTCCAAGTGGGGCAGGAAAGAGCACACTGTTGGAGATTCTTGCTGGTGTAATTCCACCTAGCAGAGTTTCTGGTGAAGTTCTTGTAAATGGGCAGCCG ATAAATGCCAGATGCTTTCGGAGGTTATCGGGGTACGTAGCACAAGATGAAGCTCTTTTCCCACTTCTAACAGTCAAAGAAACGCTCATGTACAGTGCTC GCCTCAGGTTGCCAGGCAGTTTCCATACAGCTGCAGCTATAGTTCAAGAACTATTGAAGCAACTTGGATTGGAGCACGTTGCCAATGTGAGAATTGGCAG TGAATCAAACCGAGGCATTTCAGGTGGTGAGAAACGTAGAGTTTCTGTAGGCGTAGATCTTGTTCATGATCCGGGTGTTCTTCTAATTGATGAACCAACA TCTGGATTGGATTCAGCATCAGCTCTTAATATAATTCTCTTGCTCAAATCTATGGCTATAAAGCAAGGTAAAACAATCGTGTTGACCATCCATCAACCTG GTTTCCGAATTCTTGAGCTGTTTGATAAGATTCTGTTGTTATCAAATGGAACTGTTCATCATCATGGTTCCTTGCTTCTCCTCGAACAGCGGCTTAGATT TGCTGGTCATTTCATTCCTAGGCATGTTAATGTGCTTGAGTTCGCTATCGAGATGACAGAGTCCCTGGCCATGGAAGATAGTGAAGCAAGAGAAACAGAA AATAGTGCTGTAGCACAAGATGAAGAGCTTACCAGAAGAAATCCTAACCGATACACCAATATTGAAGAAACTATTTACGCCAATGGTCGATTCAAGGAGG TTTTAATACTGGGTCAGAGATTCTCCCATATCATTTGCAGAACCAACCAGCTCTTTGCAGCAAGAATACTACAAGCAGTGCTTGGTGGGGTTGTTCTTGG AACTATATTCATGGATGTAATGAACGATTCAAAGAGACATAAACTTCAGACTCAAATTGGGTTCTTTGCCTACAGCCTCGCCTTCTTGTTGTCATCCACA ACAGAAGGCTTACCCATTTTCTTACAAGAAAGAAGAATTCTAAAGAGAGAAACCTCAAAAGGAGCTTATAGAGTTTCTTCTTATGTTGTATCAAACACTC TAGTTTTCCTTCCGTTCCTTCTAGTTGTCGCACTGCTCTACAGCACCCCAGTATACTGGCTGGTTGGATTGAGAAGGACAATGGATGGGTTTCTCTACTT TTTATTGGTGGTATGGATGGTTGTTTTGATGTCAAATTCATTTGTTGCATGTTTTAGTGCTCTTGTGCCAAATTTCATCATGGGGACCTCTCTGATTGCT GGCCTAGTGGGGTCGTTTTTCCTTTTCTCTGGGTATTTCATAGCGAAGGACGACATGCCCAAGTATTGGATCTTCATGCATTATCTGAGCTTGTTTAAGT ACCCTTTTGAGTGTTTTATGATAAATGAATATGGAGGAGAGGAAGGTAAGAGGAAGTGCTTGAAGAATATAGAAGGATCCTGCTATCTGTACGGGGAGGA GTTTCTGAAGCAACAAGGTGTGGAAGAATCAAATAAATGGAGTAATTTAGCAGTAATGACAGGTTTCATTCTTGGATACAGACTTCTTTGCTTTCTAATT CTGCTGTGCAGATCATACAGAACAAGAATTTAA
AA sequence Show only first row Show all	>Potri.013G117700.1 pacid=42812234 polypeptide=Potri.013G117700.1.p locus=Potri.013G117700 ID=Potri.013G117700.1.v4.1 annot-version=v4.1 MELPRIAPNSGSLRARYIIETKNLSYKLCGQIDELNWLLWKKTADDNAYILRKVNCEARPGEIMAIAGPSGAGKSTLLEILAGVIPPSRVSGEVLVNGQP INARCFRRLSGYVAQDEALFPLLTVKETLMYSARLRLPGSFHTAAAIVQELLKQLGLEHVANVRIGSESNRGISGGEKRRVSVGVDLVHDPGVLLIDEPT SGLDSASALNIILLLKSMAIKQGKTIVLTIHQPGFRILELFDKILLLSNGTVHHHGSLLLLEQRLRFAGHFIPRHVNVLEFAIEMTESLAMEDSEARETE NSAVAQDEELTRRNPNRYTNIEETIYANGRFKEVLILGQRFSHIICRTNQLFAARILQAVLGGVVLGTIFMDVMNDSKRHKLQTQIGFFAYSLAFLLSST TEGLPIFLQERRILKRETSKGAYRVSSYVVSNTLVFLPFLLVVALLYSTPVYWLVGLRRTMDGFLYFLLVVWMVVLMSNSFVACFSALVPNFIMGTSLIA GLVGSFFLFSGYFIAKDDMPKYWIFMHYLSLFKYPFECFMINEYGGEEGKRKCLKNIEGSCYLYGEEFLKQQGVEESNKWSNLAVMTGFILGYRLLCFLI LLCRSYRTRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53270		ABCG10	ATP-binding cassette G10, ABC-...		Potri.013G117700 [exp]	0	1	PtrWBC10-1
					Potri.003G104800 [exp]	7.61	0.8982
AT1G30800			Fasciclin-like arabinogalactan...		Potri.011G155150 [exp]	10.24	0.8578
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Potri.001G436433 [exp]	15.93	0.8661
AT5G17620			unknown protein		Potri.013G072300 [exp]	23.15	0.8607
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.016G142700 [exp]	26.19	0.8409
					Potri.018G145518 [exp]	30.24	0.8066
					Potri.006G062150 [exp]	31.08	0.8566
AT1G21280			unknown protein		Potri.004G133001 [exp]	36.37	0.8458
AT5G05800			unknown protein		Potri.008G074066 [exp]	38.36	0.8251
AT5G46940			Plant invertase/pectin methyle...		Potri.005G023050 [exp]	39.42	0.8207

Compare expression of checked genes

Potri.013G117700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.