Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31130 85 / 7e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G089900 [exp] 567 / 0 AT2G31130 84 / 1e-17 unknown protein Potri.001G376800 [exp] 66 / 2e-11 AT1G17780 82 / 3e-17 unknown protein Potri.004G055300 [exp] 52 / 4e-07 AT2G31130 66 / 5e-12 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017672 [exp] 144 / 6e-39 AT2G31130 100 / 4e-23 unknown protein Lus10033615 [exp] 144 / 6e-39 AT2G31130 101 / 2e-23 unknown protein Lus10013926 [exp] 62 / 2e-10 AT2G31130 68 / 1e-12 unknown protein Lus10000990 [exp] 61 / 7e-10 AT2G31130 70 / 3e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G118000.3 pacid=42811925 polypeptide=Potri.013G118000.3.p locus=Potri.013G118000 ID=Potri.013G118000.3.v4.1 annot-version=v4.1 ATGGACCTGAAAGGGATAACATGGGTTGGTGATTTTTATCAGAAGTTTGAAGCTAGGTTGTTGGAAGTGGAAGAAATTATGTGCGAGGAAGCAGTTAAAT ATGTGGAAAATCAGATGCAGACTGTTAGTGGTAATGTGAGGAAATTCTATTCGGATGTCATGCAAGATTTGTGCTCTCCAGATTCAGAGGTTCCTGCAAA TGGGGCAGTCTCTAAGTTGCCTGTAGATTTGGGAGCAGCTGATGTTGGGGTCCACTTGAAGCCAGATGATGGTGCGAAAGAAACATGTGAGAAGGCTGAT GATTTGAGGCTGTTGACTGGGTATTCAAAGATGACTACTGATCATGGTCCTGACCGTCTCCCAGTACGTGAAAGGATTTCTATCAGAAGAATTTCAAGGC AACATAGTAAAGGAAGTCTGTCCAATAAATCAAACCTGGACATGCATGGAAACTCTAATTGCAAGAATGTGTCTCCAAAAGAGACATCAGGGATCACCAC TCCTTCGAGTAAACATCTGATTGGATACTCAACAATTTCTGAACATTCTGATCAAAATCTGGAAGCATCTTGTGACTGGAATGCAAGACTTATAACTCCA GGGTCTGTTGAAGTTACAGAGCATTTCTCCATAGAAAAAAGTAAAAAAGAGATTGAAAATACAAGGGAGCACATGCTTGATATTTCATTCTATAAACCAT CATTGGATATGGGTAATATCACTGAAACTGGCAGGCATGAAGGAACAGACAGGAGGCCTTCCAGCATCAACCTATTAGAAGAATCAAATGCTGCAGGTGT TTGTTTAAACAATGGATTGGTTTCTATGACAGACTTTTATGCAAATGGGAATATGCAGACTAACAAATTTGCATACGAGGAGGATTTTGTGTCTAATTCA GATGAATGGGGAATAGATTCAGACAAAGACGGTACCCTCATTGAAGAGGATATGGAAATCATCCAACAAGTGGATAAGGCTCAGCTTGAGGAAACCTGTG TTTTGATGAATGGAGATGAACTTGATGCTTCTCGTGAAGGCAAAAACAAGCCTTACAAGAAGAAGATTCGGGATGTTTTTAGTTCAAGAAAGAGGTCAGT GAGGAAGGAATATGAGCAGCTTGCTGTACAGTTCAGAAGTGATCCAAAATCCAATCAAGAAGAGAGTAAAACAAGTTTAATGGCAACTCCGTCTATAAAG GAAGCAAAAAGATCCTCATCTCATGATCCCTCTGAATCTGAATGGGAGCTTGTCTAG
AA sequence Show only first row Show all	>Potri.013G118000.3 pacid=42811925 polypeptide=Potri.013G118000.3.p locus=Potri.013G118000 ID=Potri.013G118000.3.v4.1 annot-version=v4.1 MDLKGITWVGDFYQKFEARLLEVEEIMCEEAVKYVENQMQTVSGNVRKFYSDVMQDLCSPDSEVPANGAVSKLPVDLGAADVGVHLKPDDGAKETCEKAD DLRLLTGYSKMTTDHGPDRLPVRERISIRRISRQHSKGSLSNKSNLDMHGNSNCKNVSPKETSGITTPSSKHLIGYSTISEHSDQNLEASCDWNARLITP GSVEVTEHFSIEKSKKEIENTREHMLDISFYKPSLDMGNITETGRHEGTDRRPSSINLLEESNAAGVCLNNGLVSMTDFYANGNMQTNKFAYEEDFVSNS DEWGIDSDKDGTLIEEDMEIIQQVDKAQLEETCVLMNGDELDASREGKNKPYKKKIRDVFSSRKRSVRKEYEQLAVQFRSDPKSNQEESKTSLMATPSIK EAKRSSSHDPSESEWELV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31130			unknown protein		Potri.013G118000 [exp]	0	1
AT2G04550		DSPTP1E, IBR5	DUAL SPECIFICITY PROTEIN PHOSP...		Potri.014G160500 [exp]	1.73	0.8731	Pt-IBR5.1
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Potri.003G166500 [exp]	3.00	0.8544
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G106700 [exp]	4.24	0.8694
AT3G43230			RING/FYVE/PHD-type zinc finger...		Potri.018G064200 [exp]	7.21	0.8489
AT1G03950		VPS2.3	vacuolar protein sorting-assoc...		Potri.002G035900 [exp]	8.06	0.8630
AT5G24870			RING/U-box superfamily protein...		Potri.006G274700 [exp]	11.35	0.8207
AT1G57790			F-box family protein (.1)		Potri.006G212600 [exp]	11.48	0.8526
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003400 [exp]	11.61	0.8691
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G013000 [exp]	12.24	0.8388
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.011G078300 [exp]	13.19	0.8576

Compare expression of checked genes

Potri.013G118000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.