Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42570 512 / 0 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT2G31110 456 / 3e-161 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G29050 437 / 1e-153 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 421 / 6e-147 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT3G14850 375 / 2e-129 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT1G78710 369 / 8e-127 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT2G30900 367 / 6e-126 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT5G58600 334 / 1e-112 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 319 / 6e-107 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT3G54260 283 / 4e-93 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G090200 [exp] 637 / 0 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.011G064700 [exp] 474 / 2e-168 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G055000 [exp] 446 / 3e-157 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106200 [exp] 400 / 4e-139 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201700 [exp] 384 / 1e-132 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106300 [exp] 377 / 3e-130 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Potri.001G023900 [exp] 375 / 2e-129 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201600 [exp] 370 / 2e-127 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G135600 [exp] 364 / 3e-125 AT2G30900 416 / 1e-145 TRICHOME BIREFRINGENCE-LIKE 43 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002198 [exp] 523 / 0 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10033617 [exp] 521 / 0 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10000988 [exp] 436 / 2e-153 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10013929 [exp] 436 / 4e-153 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10015309 [exp] 414 / 1e-144 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10039559 [exp] 343 / 1e-116 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10031301 [exp] 338 / 3e-114 AT5G58600 452 / 1e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10009209 [exp] 334 / 3e-113 AT3G14850 423 / 2e-148 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Lus10031871 [exp] 333 / 2e-112 AT5G58600 450 / 8e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10000466 [exp] 322 / 1e-110 AT2G31110 291 / 4e-101 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.013G118500.1 pacid=42811909 polypeptide=Potri.013G118500.1.p locus=Potri.013G118500 ID=Potri.013G118500.1.v4.1 annot-version=v4.1 ATGGCTTTCTTGTTCTTCAAACCCATGTTTCTCTCTTTGTTTTTGTTCATATCTTACCACACAGCAACAGAAGCTTCAAAGCTAAGTGCCCAGAGCTTCA GCTTCAGCAATGGTACCAGTAATGCTAGAGAACTAGCTGGCAAGTGCAACTGGTTCAGAGGAAAATGGGTTTTCGATCCAAAATATCCTCTCTATGACTC AAATTGTCCGTTCATAGATCCACAGTTCAACTGTCAAAAGTATGGCCGCCATGATAGCTCCTATCTCAAGTACAGATGGCAGCCTTTTGCATGTGATTTG CCCAGGTTTAATGGGCTGTATTTCTTGGAGAAATGGAGGGGGAAGAAGATAATGTTCGTGGGCGACTCACTGAGTTTGAACCAATGGATATCTCTAACGT GTTTGATTCACTCATGGGTGCCGAACTCAAAGTATAAAGTGTTCAGGGCAGATGGGCTATATTCCGTCACATTTGAGGAATACGGAGTCAAGATACTACT ATATCGAACACCATACCTGGTAGATCTTGTCTATGATAACAAGGCAGGACGGATCTTGAAGCTTGACACGATACACAATGGCAAGGCATGGCGAGGCATG GACATGTTGATCTTCAACACCTGGCATTGGTGGACTCATACCGGAAGATCTCAGCCATGGGATTACATCCAAGAAGGGAATAAATTGTACAAAAACATGA ACCGTCTAATTGCTTTCTACAAGGGACTAACCACTTGGGCTCGATGGGTCAACCGATATGTTGATCCTTCTCGAACCAAAGTCTTCTTCCAGGACATTTC TCCCACTCATTACGAGGGCAGGGATTGGAAGGAGCCATCAAAGTCATGTGCCGGTGAGACACAACCATTCTTTGGAACAAGGTACCCGGCAGGGACACCG TTGGAATGGGTGGTGGTTAACAAGGTCTTGAGCAGGATTAAGAAACCAGTCTACTTACTAGACGTGACCTTACTTTCTCAATACCGGAAAGACGCACATC CTTCGCATTACAGCGGCAACCATGGTGGCACTGACTGTAGCCATTGGTGTCTCCCTGGGTTGCCTGATACTTGGAACCAGCTTCTATACGCAGCTCTCTT CAGTTGA
AA sequence Show only first row Show all	>Potri.013G118500.1 pacid=42811909 polypeptide=Potri.013G118500.1.p locus=Potri.013G118500 ID=Potri.013G118500.1.v4.1 annot-version=v4.1 MAFLFFKPMFLSLFLFISYHTATEASKLSAQSFSFSNGTSNARELAGKCNWFRGKWVFDPKYPLYDSNCPFIDPQFNCQKYGRHDSSYLKYRWQPFACDL PRFNGLYFLEKWRGKKIMFVGDSLSLNQWISLTCLIHSWVPNSKYKVFRADGLYSVTFEEYGVKILLYRTPYLVDLVYDNKAGRILKLDTIHNGKAWRGM DMLIFNTWHWWTHTGRSQPWDYIQEGNKLYKNMNRLIAFYKGLTTWARWVNRYVDPSRTKVFFQDISPTHYEGRDWKEPSKSCAGETQPFFGTRYPAGTP LEWVVVNKVLSRIKKPVYLLDVTLLSQYRKDAHPSHYSGNHGGTDCSHWCLPGLPDTWNQLLYAALFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Potri.013G118500 [exp]	0	1
AT1G32090			early-responsive to dehydratio...		Potri.001G133800 [exp]	1.00	0.9423
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Potri.001G204100 [exp]	1.41	0.9394
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Potri.003G044900 [exp]	3.16	0.9216	STI.5
AT4G24780			Pectin lyase-like superfamily ...		Potri.012G091500 [exp]	4.69	0.9157
AT1G23790			Plant protein of unknown funct...		Potri.008G192300 [exp]	11.48	0.9258
AT2G05790			O-Glycosyl hydrolases family 1...		Potri.002G224600 [exp]	12.84	0.9259
AT3G51470			Protein phosphatase 2C family ...		Potri.005G102500 [exp]	14.28	0.8973
AT3G47830			DNA glycosylase superfamily pr...		Potri.015G071300 [exp]	14.45	0.9092
AT5G01890			Leucine-rich receptor-like pro...		Potri.006G108600 [exp]	17.02	0.9169
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Potri.018G064900 [exp]	17.29	0.9020

Compare expression of checked genes

Potri.013G118500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.