Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42560 91 / 5e-19 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) AT3G53040 74 / 5e-14 late embryogenesis abundant protein, putative / LEA protein, putative (.1) AT2G36640 64 / 7e-11 ATECP63 embryonic cell protein 63 (.1) AT2G03740 55 / 2e-08 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) AT2G18340 47 / 3e-05 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1.2) AT2G03850 44 / 9e-05 Late embryogenesis abundant protein (LEA) family protein (.1) AT2G42530 42 / 0.0003 COR15B cold regulated 15b (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G090300 [exp] 197 / 8e-57 AT2G42560 85 / 3e-17 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000465 [exp] 168 / 2e-45 AT2G42560 207 / 6e-59 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10002197 [exp] 165 / 1e-44 AT2G42560 153 / 7e-40 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10008638 [exp] 48 / 1e-05 AT2G36640 249 / 4e-77 embryonic cell protein 63 (.1) Lus10035586 [exp] 45 / 8e-05 AT2G36640 211 / 5e-64 embryonic cell protein 63 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02987 [poplar] [flax] LEA_4 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.013G118600.2 pacid=42811580 polypeptide=Potri.013G118600.2.p locus=Potri.013G118600 ID=Potri.013G118600.2.v4.1 annot-version=v4.1 ATGGCATCTGAGCAAGCAAGGAGAGAGGATACTACTAGTGAGAGAGAATTTTCTGTGGCGAGAGAGAGAGTCCCAAAAATAGCTAACCATTTTGTGTCTT TGATTGAGAAACCAAAAGAGTCAGGTGTCCTTGTTGGTGTCATGGAAAACTTGAGTACTGAAGGTGGCAATGAAATGGGAGCGCAGTTTGAGTCTCTTGC TGATAAAGTGAGAGCTGGGACAGGTGTTTCTAGTGATAAAGAAAGGGAAAGAAGGGAAGAAGAACAAGAAAGGAAAGCAAGAGAGGGATATTCTGTTGGG AAATTTGAAGTGAAAGGTGAAGGTGAGAGAGGTGGTAGAAAAGAAAAGAATGGTGAACAAAATAATGAGCAAGAACTTTCTCTAGATGAAATTACGAAGT TAAGAGGAACGGCACAACAGAATTCATTGGAGGCTTTAAAGGCAGCTGAAGAAAGAAATGAGAAAGAAAAGGAGAAGGCTAGTCTAGTTGTGGGTTGCAA AGAGAAGGCTCCTCAAGCAAAACATACTGTTGTAGAGAAGGCTATGCAAGCCAAAGACACTGCTGCGGAGAAGGCTGCGCGAGCGAAAGAAACTTCTGGA GATAAGGCTGGACAAGCAAAAGACATTATCTCAGAGAAAGCTGCACAAGCCAAAGACATTGTCGCAGAGAGAACTGCACGAGCCAAAGACGCTGCTGCGG ATAAGGCTGAACAAGCAAAAGATACTGTTCTTGGAGGGGCTCAAAAAACTTCCCGTAATCTAGCAGAAAAGGGCTCTCGAGCCAAAGATACTGCAGCAGA GAAGACTTCACAAGCCAAAGATACTATTTGGGAAGGGGCTCAAAAATCATGTCAACAGATTGAAGAGAAGGCGTCTCAAGCGAAGAGCACTGTCCTTGAA GGTGCTCAGAAAGTTGCAGAGAAGGGAGCACAGGCAAAAGACACTGTAGCTGAAGGGTCTCAAAAATCCACCCAGTATGCTGCAGAGAAGGGAGCACAGG TAAAGGACACTGCAGTTGAAGGGGGTAGAAAAACTACTCAGTTCATAGCAGAGAAGGGAGTACAAGCAAAGGACACTGTTGTTGAAGAAACTCAAAAAAC TACCCATTATCTTGCAGAGAAAGGAGCACAGGTAAAGGACACTCTAGTTGAAGGGGCTAAGAAATTTACCCAGTATGTAACAGAGAAGGGAGCACAAGCA AAAGACACCATTTTTGAAGGGGCTAAGAAAACTTCAGAGTATGTTGCAGAGAAGGAAGTAAGAGCTAAAGATGTGACAGTGGAAAGTGGCAAAGAAGCTG TTCATTATGTAGAGAAAGTGGCTGTGGATGTGAAAGACAAGGCCGCTGCGGCTGGATGGACTGCTGCTCATTACACAACTGAGAAAGCAGTGGAGGGGAG TAAGGCAGCCGCAAGGGCAGTAGAGTATGCTGGTCAAAAGACTGCAGAGCTTGCAGGCAAGCCGTTGGGTGCTGCTAAACAGACTGCTACGGAAAGTGGC GAGAGTATGAAGGAGTATACAGCTTGGAAAAAAGAGGAGGCTGAGAGAGAGCTTGAGGCCCGTAAAGCAGCTGAAGGAGAGGTACAGTTCAAGAAATAG
AA sequence Show only first row Show all	>Potri.013G118600.2 pacid=42811580 polypeptide=Potri.013G118600.2.p locus=Potri.013G118600 ID=Potri.013G118600.2.v4.1 annot-version=v4.1 MASEQARREDTTSEREFSVARERVPKIANHFVSLIEKPKESGVLVGVMENLSTEGGNEMGAQFESLADKVRAGTGVSSDKERERREEEQERKAREGYSVG KFEVKGEGERGGRKEKNGEQNNEQELSLDEITKLRGTAQQNSLEALKAAEERNEKEKEKASLVVGCKEKAPQAKHTVVEKAMQAKDTAAEKAARAKETSG DKAGQAKDIISEKAAQAKDIVAERTARAKDAAADKAEQAKDTVLGGAQKTSRNLAEKGSRAKDTAAEKTSQAKDTIWEGAQKSCQQIEEKASQAKSTVLE GAQKVAEKGAQAKDTVAEGSQKSTQYAAEKGAQVKDTAVEGGRKTTQFIAEKGVQAKDTVVEETQKTTHYLAEKGAQVKDTLVEGAKKFTQYVTEKGAQA KDTIFEGAKKTSEYVAEKEVRAKDVTVESGKEAVHYVEKVAVDVKDKAAAAGWTAAHYTTEKAVEGSKAAARAVEYAGQKTAELAGKPLGAAKQTATESG ESMKEYTAWKKEEAERELEARKAAEGEVQFKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42560			late embryogenesis abundant do...		Potri.013G118600 [exp]	0	1
					Potri.010G134450 [exp]	2.44	0.9430
AT1G21695			hydroxyproline-rich glycoprote...		Potri.005G181200 [exp]	3.46	0.9553
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.004G033100 [exp]	6.00	0.9305	MYB.53
AT3G45850			P-loop containing nucleoside t...		Potri.006G215932 [exp]	6.24	0.8265
AT3G11930			Adenine nucleotide alpha hydro...		Potri.016G064000 [exp]	6.24	0.9105
AT5G05340			Peroxidase superfamily protein...		Potri.013G083600 [exp]	8.12	0.8893
					Potri.001G073166 [exp]	8.24	0.9402
AT5G15720		GLIP7	GDSL-motif lipase 7 (.1)		Potri.004G112700 [exp]	10.39	0.8773
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.011G076500 [exp]	10.95	0.9375
					Potri.010G072200 [exp]	10.95	0.9143

Compare expression of checked genes

Potri.013G118600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.