Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17050 533 / 0 UGT78D2 UDP-glucosyl transferase 78D2 (.1) AT5G17030 476 / 3e-166 UGT78D3 UDP-glucosyl transferase 78D3 (.1) AT5G17040 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) AT1G30530 444 / 6e-154 UGT78D1 UDP-glucosyl transferase 78D1 (.1) AT1G22380 197 / 2e-57 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G05675 196 / 2e-57 UDP-Glycosyltransferase superfamily protein (.1) AT5G59580 195 / 5e-57 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT1G22360 195 / 8e-57 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22400 195 / 1e-56 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT3G46660 190 / 5e-55 UGT76E12 UDP-glucosyl transferase 76E12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G143900 [exp] 734 / 0 AT5G17050 518 / 0.0 UDP-glucosyl transferase 78D2 (.1) Potri.018G096000 [exp] 420 / 3e-144 AT5G17050 408 / 1e-139 UDP-glucosyl transferase 78D2 (.1) Potri.006G171100 [exp] 410 / 1e-140 AT5G17050 392 / 2e-133 UDP-glucosyl transferase 78D2 (.1) Potri.006G171268 [exp] 405 / 2e-138 AT5G17050 389 / 5e-132 UDP-glucosyl transferase 78D2 (.1) Potri.009G133300 [exp] 372 / 5e-125 AT5G17050 371 / 8e-125 UDP-glucosyl transferase 78D2 (.1) Potri.009G078400 [exp] 369 / 4e-124 AT5G17050 358 / 6e-120 UDP-glucosyl transferase 78D2 (.1) Potri.006G171156 [exp] 364 / 2e-123 AT5G17050 343 / 1e-115 UDP-glucosyl transferase 78D2 (.1) Potri.006G171128 [exp] 271 / 8e-89 AT5G17050 254 / 1e-82 UDP-glucosyl transferase 78D2 (.1) Potri.005G073766 [exp] 198 / 8e-58 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025854 [exp] 501 / 8e-176 AT5G17050 523 / 0.0 UDP-glucosyl transferase 78D2 (.1) Lus10021437 [exp] 200 / 2e-58 AT2G36970 530 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10025741 [exp] 197 / 1e-57 AT1G22380 525 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10021438 [exp] 197 / 2e-57 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016126 [exp] 191 / 6e-55 AT2G28080 551 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016127 [exp] 187 / 8e-55 AT2G36970 426 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1) Lus10035903 [exp] 190 / 1e-54 AT1G22360 522 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10016128 [exp] 189 / 3e-54 AT2G36970 558 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10013925 [exp] 187 / 1e-53 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10016461 [exp] 182 / 5e-52 AT3G11340 381 / 3e-129 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.013G118700.1 pacid=42811488 polypeptide=Potri.013G118700.1.p locus=Potri.013G118700 ID=Potri.013G118700.1.v4.1 annot-version=v4.1 ATGCATCAACTAATCCTAAAAATGCCTCAAACCGCCGCCGGCCCTGATCATGTTGCAGTCCTTGCCTTCCCTTTCTCCTCCCATGCCGCTCCGTTACTAG CCATCATCCACCGCCTCGCCACTTCCTCCCCAAACACACACTTCTCCTTCTTCAGCACCCAACAGTCCAACAACTCCATCTTCTCCATTTACAAGCAAAA CAGGAACATCAAAGCATATGACGTGTGGGATGGTGTCCCTGAGGGCTACGTGTTTGCTGGGAAGCCTCAAGAGCACATTGAGCTGTTCATGAAGTCAGCT CCTAATAGCTTCAAGAAGGCCATGGAGGTAGCTGTATCAGAGACAGGGAGAAAGGTGAGTTGTTTGGTGAGTGATGCCTTCTTTTGGTTCGCTGGTGAGA TGGCGGAGGAGATAGGGGTGGTTTGGCTGCCCTTTTGGACTGCAGGACCTACCTCACTTTCTGCTCATGTTTACACTGATCTCATCAGGGATACTTTTGG AGTTGGAGGTGTGGCAGGGCATGAAGATGAACTGCTAAGTTTGATTCCAGGAATGTCCAAAATTCGAATCCGTGATTTGCCAGAAGGGGTACTCTTCGGA AACTTGGAAGCGGTCTTTCCAAACATGCTGCATAAAATGGGAAGAGCGTTGCCGAAAGCAGCTGCAGTGTTCATTAACTCATTTGAAGAGCTAGACCCTA GGATAACAAGGGACTTGAAGTCTAGATTCAAAGAATTCCTCAACATTGGACCCTTCAATATGATTTCACCAGCACCACCAGCGGCAGACACATATGGTTG TATAACATGGCTTGACAGGCAAAAACTTGCTTCTGTGGCATATCTTAGCTTTGGATCCATCACAACACCACCACCACATGAACTTGTGGCACTAGCTGAG GCCTTAGAGACAAGTGGGGTGCCATTTATATGGTCACTGAAGGACAACTCGAAGGTTCATTTGCCCAATGGATTCTTGGACAGAACCACATCACAGGGAC TTCTGGTACCATGGACTCCTCAAATGGAAGTCTTGGCTCACAAAGCAGTAGGGGTGTTTATAACTCACTGTGGATGGAATTCATTGCTTGAGAGCATAGC AGGAGGGGTGCCCATGATTTGTAGGCCATTTTTTGGCGATCAAAGGCTCAATGGACGCATGGTAGAGGATGCGTGGAAGATTGGTCTCCAGGTTGAGGAT GGAGTCTTTAGAAAGCATGGAGTGTTAAATAGCTTGGATAAAGTTCTTTCACAAGACTCGGGGGAGGAAATGAGGGAGAACATAAGAGCACTTCAACAAC TCGCAAAGAAAGCCATTGGACCAAATGGGAGCTCCATCAATAATTTTGTTTCTTTGTCAGATCTAGTGTTCAATACTAAAATATAG
AA sequence Show only first row Show all	>Potri.013G118700.1 pacid=42811488 polypeptide=Potri.013G118700.1.p locus=Potri.013G118700 ID=Potri.013G118700.1.v4.1 annot-version=v4.1 MHQLILKMPQTAAGPDHVAVLAFPFSSHAAPLLAIIHRLATSSPNTHFSFFSTQQSNNSIFSIYKQNRNIKAYDVWDGVPEGYVFAGKPQEHIELFMKSA PNSFKKAMEVAVSETGRKVSCLVSDAFFWFAGEMAEEIGVVWLPFWTAGPTSLSAHVYTDLIRDTFGVGGVAGHEDELLSLIPGMSKIRIRDLPEGVLFG NLEAVFPNMLHKMGRALPKAAAVFINSFEELDPRITRDLKSRFKEFLNIGPFNMISPAPPAADTYGCITWLDRQKLASVAYLSFGSITTPPPHELVALAE ALETSGVPFIWSLKDNSKVHLPNGFLDRTTSQGLLVPWTPQMEVLAHKAVGVFITHCGWNSLLESIAGGVPMICRPFFGDQRLNGRMVEDAWKIGLQVED GVFRKHGVLNSLDKVLSQDSGEEMRENIRALQQLAKKAIGPNGSSINNFVSLSDLVFNTKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.013G118700 [exp]	0	1
					Potri.003G189601 [exp]	3.46	0.9226
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.004G155400 [exp]	5.09	0.9142
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.010G179900 [exp]	6.24	0.9134
AT5G17220		GST26, TT19, AT...	TRANSPARENT TESTA 19, GLUTATHI...		Potri.017G138800 [exp]	7.74	0.9072	ATGSTF10.1
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Potri.017G125600 [exp]	8.00	0.9118
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.018G094800 [exp]	9.79	0.9015
AT4G36970			Remorin family protein (.1)		Potri.007G044350 [exp]	10.95	0.8729
					Potri.006G077750 [exp]	12.00	0.8702
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.014G113900 [exp]	12.60	0.6795
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G157750 [exp]	13.26	0.8915

Compare expression of checked genes

Potri.013G118700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.