Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04530 562 / 0 KCS19 3-ketoacyl-CoA synthase 19 (.1) AT1G07720 496 / 1e-173 KCS3 3-ketoacyl-CoA synthase 3 (.1) AT2G28630 484 / 4e-169 KCS12 3-ketoacyl-CoA synthase 12 (.1) AT1G01120 316 / 1e-102 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT1G68530 294 / 2e-94 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT4G34510 291 / 2e-93 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G15090 289 / 1e-92 KCS8 3-ketoacyl-CoA synthase 8 (.1) AT2G26250 290 / 2e-92 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) AT1G25450 289 / 2e-92 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT2G46720 286 / 9e-92 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G119800 [exp] 747 / 0 AT5G04530 558 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G120100 [exp] 697 / 0 AT5G04530 543 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.019G091600 [exp] 645 / 0 AT5G04530 520 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.010G212600 [exp] 604 / 0 AT5G04530 576 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.001G234500 [exp] 515 / 0 AT2G28630 647 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.009G026800 [exp] 510 / 2e-179 AT2G28630 660 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.008G048500 [exp] 363 / 1e-123 AT5G04530 337 / 2e-113 3-ketoacyl-CoA synthase 19 (.1) Potri.002G178000 [exp] 315 / 2e-102 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.014G104300 [exp] 303 / 9e-98 AT1G01120 775 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023458 [exp] 574 / 0 AT5G04530 605 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10040333 [exp] 572 / 0 AT5G04530 611 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10039906 [exp] 480 / 6e-166 AT5G04530 497 / 1e-172 3-ketoacyl-CoA synthase 19 (.1) Lus10015222 [exp] 477 / 7e-166 AT2G28630 654 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10005434 [exp] 474 / 6e-165 AT2G28630 664 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10002191 [exp] 472 / 3e-164 AT5G04530 495 / 1e-173 3-ketoacyl-CoA synthase 19 (.1) Lus10033626 [exp] 424 / 2e-145 AT5G04530 467 / 4e-162 3-ketoacyl-CoA synthase 19 (.1) Lus10033625 [exp] 421 / 2e-140 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1) Lus10002192 [exp] 385 / 5e-131 AT5G04530 389 / 1e-132 3-ketoacyl-CoA synthase 19 (.1) Lus10004918 [exp] 378 / 5e-128 AT2G28630 560 / 0.0 3-ketoacyl-CoA synthase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF08392 [poplar] [flax] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [poplar] [flax] Thiolase PF08541 [poplar] [flax] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Potri.013G119600.1 pacid=42811413 polypeptide=Potri.013G119600.1.p locus=Potri.013G119600 ID=Potri.013G119600.1.v4.1 annot-version=v4.1 ATGGAGTTGTTCTTGGCAATGCTTCCACTATTATTGTGGTATATTATCTTCAACCTTTTTAAGTTGGGATACCAAAAGAAAGACCACTGTTGCTATATGC TAAGCTATCAGTGCCATAAAGCCACTGAGGACCAAAAGCTCGATACTGGATCCTGTGCTAAAATTGTTACCCGAAACAAGAATCTGGGAATAGAAGAATA CAGGTTTCTTTTAAGAACTATGGTTAGTTCTGGCATCGGTGAACAAACTTATTGCCCAAAAAATATCATAGAGGGAAGAGAGGAATCTGCAACTCATATG GATGCTGTTTCGGAGATGGATGGTATCATTTTTCATACCCTTGATAAGCTCTTTGCTAAGACAGGAGTTTCTCCATCAGAAATCGACATTATTGTCTCTT CAGTCTCTTTGTTCTCACCAGTTCCCTCACTAACAGCTCGAGTAATAAACCATTACAAGATGAGGGAGGACATCAAAGCATTTAATCTCTCTGGAATGGG TTGCAGTGCAAGTGTAGTAGCCGTTGATTTGGTTAAGCAATTGTTCAAGACATATAAGAATTCACTTGCAATCGTCGTGAGCACAGAATCCATGGGTCCA AATTGGTATTCTGGCAAAGACAAGTCCATGATGCTCTCCAACATTCTTTTTCGTACCGGGGGCTGCTCCATGCTCTTAACAAATAATAGAGCTTTGAAGC ATAAAGCCCTCTTGGAATTGACTTGTTCTGTACGCACACATATCGGCTCTAATGATGAAGCATACAGCAGCTGCATCCAAGTAGAAGATGACCTTGGCCA CAAAGGCTTTCGGCTCACCAGAGATCTACCTAAAGCTGGTGCTAAAGCTTTAACCATGAATCTCCGAGTTCTTCTTCCTAAAGTTTTACCACTGTCAGAA TTGCTCCGCTACAAAATAAGTTACTATCGAAACAAAATAATGAAGAGACCAACTTCTAAGGCTGCAGGACCTGGTTTGGATCTCAGGTCTGGAATCGACC ACTTTTGTGTGCACCCTGGTGGGCGGGCAATTATTGATGAGGTTGGTAAGAGTTTAGCACTCAACGATTATGATCTCGAACCAGCTAGAATGGCACTTTA TCGGTTTGGAAATACATCATCCGGCGGCCTGTGGTATGTTTTAGGTTACATGGAGGCCAAGAAAAGGCTCAAGAAGGGTGATAAAATACTAATGATCAGC CTTGGGGCAGGTTTTAAGTGCAACAATTGTGTGTGGAAAGTTATGAAGGACTTGGAGGACACAAATGTCTGGCAAGACTGCATAGATCAATACCCTCCAA AAACCATAGACAACCCTTTCTCTGAGAAGTTTGATTGGATCAATGATGAAAGCATGAATTTCGCCAGGATTGAAGATTTCCTACCACAAATCCAGTTGTT AGCATAA
AA sequence Show only first row Show all	>Potri.013G119600.1 pacid=42811413 polypeptide=Potri.013G119600.1.p locus=Potri.013G119600 ID=Potri.013G119600.1.v4.1 annot-version=v4.1 MELFLAMLPLLLWYIIFNLFKLGYQKKDHCCYMLSYQCHKATEDQKLDTGSCAKIVTRNKNLGIEEYRFLLRTMVSSGIGEQTYCPKNIIEGREESATHM DAVSEMDGIIFHTLDKLFAKTGVSPSEIDIIVSSVSLFSPVPSLTARVINHYKMREDIKAFNLSGMGCSASVVAVDLVKQLFKTYKNSLAIVVSTESMGP NWYSGKDKSMMLSNILFRTGGCSMLLTNNRALKHKALLELTCSVRTHIGSNDEAYSSCIQVEDDLGHKGFRLTRDLPKAGAKALTMNLRVLLPKVLPLSE LLRYKISYYRNKIMKRPTSKAAGPGLDLRSGIDHFCVHPGGRAIIDEVGKSLALNDYDLEPARMALYRFGNTSSGGLWYVLGYMEAKKRLKKGDKILMIS LGAGFKCNNCVWKVMKDLEDTNVWQDCIDQYPPKTIDNPFSEKFDWINDESMNFARIEDFLPQIQLLA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.013G119600 [exp]	0	1
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.008G170300 [exp]	1.41	0.9773
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Potri.009G096800 [exp]	3.46	0.9702	SEP1.2
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Potri.013G067500 [exp]	3.87	0.9698
AT5G66600			Protein of unknown function, D...		Potri.009G111100 [exp]	6.92	0.9599
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.001G255800 [exp]	8.77	0.9576
AT2G23910			NAD(P)-binding Rossmann-fold s...		Potri.003G093700 [exp]	9.21	0.9602
AT4G25830			Uncharacterised protein family...		Potri.018G094500 [exp]	9.38	0.9562
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Potri.003G094400 [exp]	11.22	0.9566
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Potri.002G180300 [exp]	14.96	0.9606
AT1G31330		PSAF	photosystem I subunit F (.1)		Potri.003G148900 [exp]	19.13	0.9200

Compare expression of checked genes

Potri.013G119600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.