Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58110 385 / 9e-122 unknown protein AT2G42370 223 / 4e-62 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G091700 [exp] 593 / 0 AT3G58110 226 / 6e-63 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039903 [exp] 461 / 2e-151 AT3G58110 394 / 3e-126 unknown protein Lus10002186 [exp] 285 / 6e-85 AT3G58110 404 / 5e-131 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G119700.3 pacid=42811558 polypeptide=Potri.013G119700.3.p locus=Potri.013G119700 ID=Potri.013G119700.3.v4.1 annot-version=v4.1 ATGGCTTCGTCTCCAACTCTCCCTCAAGATTCAACCCCAGACCCAAATACTCTCTCACAAAACCCTAACAACACAAACCCAGATCAAATTCAACAAGCAT TACCTGATGATGATGATGATGATACCCAATTCCCCAAAACCCTAACCCTTGAAATCCCGAACCCTAACTCACAAGAAGATGACCCAACCAACCAAAACCA TGACGACTTCGAAGACCTCACCCTTTTCTCTCCCACCACAACCACCACCACCACCACCACCTACCGTCGTGCTGGGGGTGGACGGAAAAGCAGGAAGGCT AACCAAAAACGACGTGTACAGGTTAAAAAGTCTGAAAAAAAGCTTGAAACTTTAAGCCAAACCCTAAATCCAATCCCCTTTGTACCCAACAAAATCCTCG ACCTCGCTTCACATGAAACCCTTTTAAAAAAATTGGGTTTGTGGGAATTTGTGCATTTGCAATTTGATACTAATATTCGTGCTGATTTGCTAGCACAATT GATTGCTGGTTATAATCCTGCGATGCGGGGCAGTTATGTTAATGAGGTTAAGATCATGGTCAATCGTGCTGATTTAGGGCGTGCTTTGAAGTTACCGGTG AAGAAAGAGAAAGGTAGTGGAGGTGATGGTGCATCTGAGGTTACGGAGAGTGTGGAATCAATTGGGTTTATAGAGGAGTTGGTGTCAAATTGGATTTTGT TACATGAGGATACTTGGATGATGCCGCCAGATATATTGAACTGGATTAAATTGATTAAAGAAGGGAACTTTGACAAATTGGATTGGGCTGGAATGATTTG GTATATGGTAGAGAAAGAGTTGAATGCGGAACCTGGTTTAGGAAATTGTTATTATGCGTCGCATTTGCAGTGTTTGATAAAGTGCCAGAGAGAGGAGTTG TTGAAGGAGGGAAGTCTTAAAATGGAGATTGATGTTAAGGATGATGAAGATGATGAGGGTGCGAAGATGGAGCAGAGTGTGATGATGGAAGAGGGTGCGG AGATGGGTGAGGAGTTTAGGGGTGAATCATCTGTGTTAGAGGAGCATAGAATTGAGTTGAGTCTTGGAGGGATGGATAATGCAGGGAAGGAAGAGGTGGA GAATGTGGGTGATGAGGATGTGATGGATTTTGAGGAGAGGAAAGAGGAAGAAGATCAGGGTCAGTGGGAAAAGATCAGTATGGACGGGCATTATCTGCAG CCATGTGGTAGTTTTAGTCAAGTTGCGGGAATGGAATTTGAGGAAGAGAGGAAACAGCAGGATGAGGTGGAGGGAGAGGAAGAGGGGAAGGGAGGAGAGG AAGGAGAGGAAGAGGAAGGGGAGGAGGGGGAGGAGGACGAAGAGGAGGGGGAGGACGACGATGATATTGGTTTCCATATTGCAGCCAGAGGGAATATTTT GGAGGGCATAAGCTCTGAGAATCTTCTTGAGGTGATGGGAGCAGCTCAAGTTCCTTTTAGTTCAGGTGTCCAAATTCATGATAATGTATCTTCCAGGGAA TTTCTCGTTTCTAGGGTTGATACAGAGACAATTCCAGGTGGTTCTTCAATTTTTGGTAATGTTGGTGGAAGCAAGAGGGTGATTGAGCATCTTCAGAGTG ATATACCGCATCACTCACTTAATGGTGGTAATAAGAGGATGCGGAGTGATGGGCATTGGGATGCAAAGCCGTATTCGGACTTTGATAGTTTTGAGGAGGA GATGCAGCATATGATGGGAAAAGCCAGAATGATGATGGAGGAAAAGGAGCAGTCATGTCAGGAAATGAGTATGCATCAACAGGTGTTGTATAATGAGTTG CAGCAGCGTGAAAACTTCATTCAGCAGTTGCAGAAGACCAAGATGGAAGAGCAGCGGAAGAGCCAGTTGGAGGTTTATAGGCTTGAACGTGAACTGTATA TGATGGGAAATCTTTTAGAGGGCTATAGAAAGGCGTTGAAGGAGACACACAAGGCATTTTCTGAATACAGAGCAAGATGCCAACTACCTGAAGAACCGAT TTATAAGGATACTGGGTCTGGTGGTCTTGTTTTGAGCACCATGGAGTTGGAGAAGCAGCGCTTGAAGCAAGAGGAAGAAGAAAGGCTAAACCGTGTATTT CTCGAGAAGTTGGTTAAGGAATTTGAAGCAGAGTGCATTCCTAAATTTGAAGGATACGAGAATACTGTTAAGTTGCTGAGTGACAAGTTACTGGTTGTTG GGGAAAAATTCAATCTCTTGAAGGAAATGTCTGGAAAGCGAAAGGTGTCAGAGATGTCAGAATGTGTTGCCACTGAGGACTGCAATACAGCTAAAGAATC TGTTCCAACTGAAGAATGTGTTTCAGCTGAAGAATCAGCTGTAGTACAGGCTCCTGCCGAAGAATCTGTTCCAGTTGTAGCACAGGCTCCTGCTCCTGCC GAAGAATCTGTTCCAGTTGTAGCACAGGCTTCTGCCGAAGAATCTGTTCCAGTTGTAGAACGTGCTCCTGCTGAAGAATGTGATCCAATGGAAGAATGTG TTCCAACAGAAGGATGA
AA sequence Show only first row Show all	>Potri.013G119700.3 pacid=42811558 polypeptide=Potri.013G119700.3.p locus=Potri.013G119700 ID=Potri.013G119700.3.v4.1 annot-version=v4.1 MASSPTLPQDSTPDPNTLSQNPNNTNPDQIQQALPDDDDDDTQFPKTLTLEIPNPNSQEDDPTNQNHDDFEDLTLFSPTTTTTTTTTYRRAGGGRKSRKA NQKRRVQVKKSEKKLETLSQTLNPIPFVPNKILDLASHETLLKKLGLWEFVHLQFDTNIRADLLAQLIAGYNPAMRGSYVNEVKIMVNRADLGRALKLPV KKEKGSGGDGASEVTESVESIGFIEELVSNWILLHEDTWMMPPDILNWIKLIKEGNFDKLDWAGMIWYMVEKELNAEPGLGNCYYASHLQCLIKCQREEL LKEGSLKMEIDVKDDEDDEGAKMEQSVMMEEGAEMGEEFRGESSVLEEHRIELSLGGMDNAGKEEVENVGDEDVMDFEERKEEEDQGQWEKISMDGHYLQ PCGSFSQVAGMEFEEERKQQDEVEGEEEGKGGEEGEEEEGEEGEEDEEEGEDDDDIGFHIAARGNILEGISSENLLEVMGAAQVPFSSGVQIHDNVSSRE FLVSRVDTETIPGGSSIFGNVGGSKRVIEHLQSDIPHHSLNGGNKRMRSDGHWDAKPYSDFDSFEEEMQHMMGKARMMMEEKEQSCQEMSMHQQVLYNEL QQRENFIQQLQKTKMEEQRKSQLEVYRLERELYMMGNLLEGYRKALKETHKAFSEYRARCQLPEEPIYKDTGSGGLVLSTMELEKQRLKQEEEERLNRVF LEKLVKEFEAECIPKFEGYENTVKLLSDKLLVVGEKFNLLKEMSGKRKVSEMSECVATEDCNTAKESVPTEECVSAEESAVVQAPAEESVPVVAQAPAPA EESVPVVAQASAEESVPVVERAPAEECDPMEECVPTEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58110			unknown protein		Potri.013G119700 [exp]	0	1
AT3G06400		CHR11	chromatin-remodeling protein 1...		Potri.010G021400 [exp]	4.47	0.8648
AT3G49601			unknown protein		Potri.006G233000 [exp]	5.00	0.8752
AT2G16485			nucleic acid binding;zinc ion ...		Potri.004G161700 [exp]	5.09	0.8986
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.009G003900 [exp]	6.32	0.8772
AT5G53440			unknown protein		Potri.015G014800 [exp]	6.70	0.8823
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Potri.003G104200 [exp]	6.92	0.8667
AT5G12400			DNA binding;zinc ion binding;D...		Potri.001G254300 [exp]	7.93	0.8689
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Potri.008G114800 [exp]	9.79	0.8542
AT1G80930			MIF4G domain-containing protei...		Potri.016G121100 [exp]	10.09	0.8695
AT5G41770			crooked neck protein, putative...		Potri.001G094400 [exp]	10.95	0.8235

Compare expression of checked genes

Potri.013G119700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.