Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04530 544 / 0 KCS19 3-ketoacyl-CoA synthase 19 (.1) AT1G07720 482 / 2e-168 KCS3 3-ketoacyl-CoA synthase 3 (.1) AT2G28630 479 / 3e-167 KCS12 3-ketoacyl-CoA synthase 12 (.1) AT1G01120 339 / 7e-112 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT4G34510 319 / 1e-104 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G15090 315 / 3e-103 KCS8 3-ketoacyl-CoA synthase 8 (.1) AT2G16280 311 / 2e-101 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G68530 311 / 3e-101 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT4G34250 310 / 6e-101 KCS16 3-ketoacyl-CoA synthase 16 (.1) AT2G46720 308 / 1e-100 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G119800 [exp] 857 / 0 AT5G04530 558 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119600 [exp] 752 / 0 AT5G04530 561 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.019G091600 [exp] 616 / 0 AT5G04530 520 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.010G212600 [exp] 588 / 0 AT5G04530 576 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.001G234500 [exp] 500 / 5e-176 AT2G28630 647 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.009G026800 [exp] 498 / 4e-175 AT2G28630 660 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.008G048500 [exp] 378 / 7e-130 AT5G04530 337 / 2e-113 3-ketoacyl-CoA synthase 19 (.1) Potri.002G178000 [exp] 331 / 9e-109 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.014G104300 [exp] 322 / 2e-105 AT1G01120 775 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023458 [exp] 556 / 0 AT5G04530 605 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10040333 [exp] 553 / 0 AT5G04530 611 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10039906 [exp] 474 / 4e-164 AT5G04530 497 / 1e-172 3-ketoacyl-CoA synthase 19 (.1) Lus10002191 [exp] 466 / 2e-162 AT5G04530 495 / 1e-173 3-ketoacyl-CoA synthase 19 (.1) Lus10015222 [exp] 464 / 4e-161 AT2G28630 654 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10005434 [exp] 463 / 4e-161 AT2G28630 664 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10033626 [exp] 422 / 5e-145 AT5G04530 467 / 4e-162 3-ketoacyl-CoA synthase 19 (.1) Lus10033625 [exp] 428 / 2e-143 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1) Lus10002192 [exp] 412 / 1e-141 AT5G04530 389 / 1e-132 3-ketoacyl-CoA synthase 19 (.1) Lus10004918 [exp] 390 / 2e-133 AT2G28630 560 / 0.0 3-ketoacyl-CoA synthase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF08392 [poplar] [flax] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [poplar] [flax] Thiolase PF08541 [poplar] [flax] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Potri.013G120100.1 pacid=42812520 polypeptide=Potri.013G120100.1.p locus=Potri.013G120100 ID=Potri.013G120100.1.v4.1 annot-version=v4.1 ATGGGGTTGTTCTTGGCAATGCTTCCACTGTTATTGCACTATATTATCTTCAACCTTTATAAGTTAGGATACCAAAAGAAAGATCAGTGTTGCTATATGC TAAGCTATGAGTGCCATAAAGCCGCTGAAGACCAGAAGCTTGATCCTAGATCCAGTGCTAGAATTATTTCACGAAACAAGAATCTCGGAATAGAAGAATA CAAGTTTCTTTTAAAGACTACGGTTAGTTCTGGCATTGGTGAAGAAACTTGTATCCCAAAAAATATCATGGAAGGAAGAGAGGAATCTGCAACTCTTATG GATGAAATTTCGGAGATGGATGGTATCCTTTTCGATGCTGTTGATAAGCTCTTTGCCAAGACAGGAGTTTCTCCATCAGAAATCAACAGTATTGTCTCTT CAGTCTCTTTGTTCTCACCAGCTCCCTCTCTAACAGCTCGAGTAATAAACCGTTACAAGATGAGGGAGGACATCAAGGCATTCAATCTCTCTGGAATGGG TTGTAGTGCAAGTGCAGTAGCCATTGATTTAGTCAAGCAACTGTTCAAGACATACAAGAATTCATTTGCAATCGTTATGAGCACAGAATCCATGAGTTCA CATTGGTATCCTGGAAAAGACAAGTCCATGATGCTCTCCAACATTCTATTTCGTACTGGGAGCTGCTCCATTCTCTTAACAAATAACAGAGATTGGAAGA ATAAAGCCCTCATGGAATTGACTTGTTCTGTACGCACACATATCGGCTCTAATGACGAAGCATATAACAGCTGCTTCCAAGCAGAAGATGACCTTGGAAT CAATGGCTTTCGGCTCAACAAAGATCTACCTAAAGCTGGTGCTAAAGCTTTAACCATGAATCTCCGAGTTCTTCTTCCTAAAGTTATACCACTGTCAGAG GTGCTCCGCTATCGAATAAGCTATTATCGAAATAAAATAATGAAGCGGCCAACTCCTAAGGATGCAGGGCCTGGTTTGGATCTCAAGTCTGGAATCGATC ACTTTTGTGTGCACCCTGGTTGGCGGGCAATTATTGATGGGGCTGGGCAGAGTTTAGCACTCAATGATTATGATCTGGAACCAGCTAGAATGGCACTTTA TCGGTTTGGAAATACATCATCCGGCGGCCTGTGGTATGTTTTAGGTTACATGGAGGCCAAGAAAAGGCTCAAGAAGGGTGATAAAATACTAATGATCAGC CTTGGGGCAGGTTTTAAGTGCAACAATTGTGTGTGGAAAGTTATGAAGGACGTGGAGGACACGAATGTCTGGAAAAACTGCACAGATCAATACCCTACAA AAACCTTAGCCAACTCTTCTTAG
AA sequence Show only first row Show all	>Potri.013G120100.1 pacid=42812520 polypeptide=Potri.013G120100.1.p locus=Potri.013G120100 ID=Potri.013G120100.1.v4.1 annot-version=v4.1 MGLFLAMLPLLLHYIIFNLYKLGYQKKDQCCYMLSYECHKAAEDQKLDPRSSARIISRNKNLGIEEYKFLLKTTVSSGIGEETCIPKNIMEGREESATLM DEISEMDGILFDAVDKLFAKTGVSPSEINSIVSSVSLFSPAPSLTARVINRYKMREDIKAFNLSGMGCSASAVAIDLVKQLFKTYKNSFAIVMSTESMSS HWYPGKDKSMMLSNILFRTGSCSILLTNNRDWKNKALMELTCSVRTHIGSNDEAYNSCFQAEDDLGINGFRLNKDLPKAGAKALTMNLRVLLPKVIPLSE VLRYRISYYRNKIMKRPTPKDAGPGLDLKSGIDHFCVHPGWRAIIDGAGQSLALNDYDLEPARMALYRFGNTSSGGLWYVLGYMEAKKRLKKGDKILMIS LGAGFKCNNCVWKVMKDVEDTNVWKNCTDQYPTKTLANSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.013G120100 [exp]	0	1
AT5G19875			unknown protein		Potri.003G216000 [exp]	2.00	0.9885
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Potri.002G198100 [exp]	3.00	0.9893
AT4G24350			Phosphorylase superfamily prot...		Potri.013G080400 [exp]	3.31	0.9925
AT5G18020			SAUR-like auxin-responsive pro...		Potri.009G126500 [exp]	4.47	0.9874
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Potri.013G051000 [exp]	5.65	0.9895
AT5G41060			DHHC-type zinc finger family p...		Potri.014G153600 [exp]	6.24	0.9862
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.006G245600 [exp]	7.54	0.9835
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.003G192650 [exp]	8.00	0.9881
AT4G24340			Phosphorylase superfamily prot...		Potri.013G081233 [exp]	9.21	0.9884
AT2G30220			GDSL-like Lipase/Acylhydrolase...		Potri.013G153000 [exp]	9.79	0.9883

Compare expression of checked genes

Potri.013G120100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.