Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53690 159 / 6e-47 RING/U-box superfamily protein (.1) AT3G14250 147 / 1e-42 RING/U-box superfamily protein (.1) AT2G26135 111 / 2e-28 RING/U-box protein with C6HC-type zinc finger (.1) AT3G45580 106 / 2e-26 RING/U-box protein with C6HC-type zinc finger (.1) AT3G45540 105 / 2e-26 RING/U-box protein with C6HC-type zinc finger (.1) AT5G37560 105 / 8e-26 RING/U-box superfamily protein (.1) AT5G60250 105 / 1e-25 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G25360 99 / 1e-23 RING/U-box superfamily protein (.1) AT3G45470 95 / 2e-23 IBR domain containing protein (.1) AT3G43750 97 / 4e-23 RING/U-box protein with C6HC-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G123500 [exp] 464 / 1e-167 AT3G53690 163 / 1e-48 RING/U-box superfamily protein (.1) Potri.019G093600 [exp] 408 / 4e-146 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.018G064400 [exp] 169 / 3e-50 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.003G187700 [exp] 160 / 7e-48 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.001G037200 [exp] 147 / 8e-43 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.015G117600 [exp] 98 / 5e-23 AT4G19670 661 / 0.0 RING/U-box superfamily protein (.1.2) Potri.006G104700 [exp] 96 / 4e-22 AT5G60250 424 / 4e-141 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.012G119000 [exp] 92 / 5e-21 AT4G19670 622 / 0.0 RING/U-box superfamily protein (.1.2) Potri.009G150100 [exp] 85 / 1e-18 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000412 [exp] 139 / 6e-39 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1) Lus10026104 [exp] 138 / 1e-38 AT3G14250 240 / 1e-77 RING/U-box superfamily protein (.1) Lus10024093 [exp] 134 / 4e-38 AT3G14250 209 / 2e-66 RING/U-box superfamily protein (.1) Lus10022063 [exp] 121 / 5e-33 AT3G53690 175 / 3e-53 RING/U-box superfamily protein (.1) Lus10038341 [exp] 107 / 2e-26 AT4G19670 607 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036202 [exp] 100 / 1e-23 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036128 [exp] 97 / 7e-23 AT5G60250 410 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10036127 [exp] 96 / 3e-22 AT5G60250 338 / 9e-108 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042610 [exp] 79 / 1e-16 AT3G53690 113 / 9e-17 RING/U-box superfamily protein (.1) Lus10022064 [exp] 56 / 5e-10 AT3G14250 78 / 2e-18 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF01485 [poplar] [flax] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Potri.013G120300.19 pacid=42812615 polypeptide=Potri.013G120300.19.p locus=Potri.013G120300 ID=Potri.013G120300.19.v4.1 annot-version=v4.1 ATGGGAAACACAATGCAAAAATCCGAAGAAACAAAAGTAGAAGAACCAGGACTGCTGCGACAAGAAGAAGATTCAAACTTTACTTGTGAAATTTGCACCG AACCTATGCTGGCAATCAGGAAATTCAAGAATGGTAGCTTGTGTAAACATCCTTTCTGTTTGGACTGCATAGCCAAATATATTGAAGTAACAGTTGAGGA ATCCACTGGCTGCATTGAATGCCCTGGGCTGAACTGCAAGCAACCTTTGGACCCTCTCTCATGCAGGCGTATCATCTCGAAGCCAATATTTGAGAAATGG TGTGATCATCTATGTGATTCTACGGTTTTAGGGTCTGAAAGTTGCTATTGCCCATACCGAGATTGCTCCGTGTTGGTTTTGAATGAGTGTATGGATAACC TGAAGAAGATAAAATGTCCTAACTGCAAGAAAAACTTCTGTTTTCTTTGCAAGATTCCGTGGCATGCAGGATACCGGTGCAATGAGAGCAGACATCTAAG AGATAGGAATGACATTCTGGTTGGTGAACTGATTGAAGAGAAAAGGTGGACTAGATGTTACAATTGTGGTCACTCGGTTGAGCGAGTTAGTGGTTGCAGG GATATAAAATGCAAGTGTGGGGTTCAGTTTTGCCATCAATGTGGAGGACCATTCCATTTCGGTCCTTGTAAGCACAAGTGCTGTGGAAATGTTCTTTGCA ATATATTTATTTTTATGATGTTGCTGGCTTTCTGCTACTTCGTATATTTTGAAGTACATTCAGTCCCATCAAGAAAAGGGTAG
AA sequence Show only first row Show all	>Potri.013G120300.19 pacid=42812615 polypeptide=Potri.013G120300.19.p locus=Potri.013G120300 ID=Potri.013G120300.19.v4.1 annot-version=v4.1 MGNTMQKSEETKVEEPGLLRQEEDSNFTCEICTEPMLAIRKFKNGSLCKHPFCLDCIAKYIEVTVEESTGCIECPGLNCKQPLDPLSCRRIISKPIFEKW CDHLCDSTVLGSESCYCPYRDCSVLVLNECMDNLKKIKCPNCKKNFCFLCKIPWHAGYRCNESRHLRDRNDILVGELIEEKRWTRCYNCGHSVERVSGCR DIKCKCGVQFCHQCGGPFHFGPCKHKCCGNVLCNIFIFMMLLAFCYFVYFEVHSVPSRKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53690			RING/U-box superfamily protein...		Potri.013G120300 [exp]	0	1
AT2G04690			Pyridoxamine 5'-phosphate oxid...		Potri.001G470300 [exp]	1.00	0.8693
AT1G44770			unknown protein		Potri.005G176500 [exp]	3.46	0.8278
AT4G00355		ATI2	ATG8-interacting protein 2, un...		Potri.002G160700 [exp]	4.89	0.8208
AT5G23750			Remorin family protein (.1.2)		Potri.012G140800 [exp]	6.70	0.8115
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.005G040300 [exp]	7.41	0.7988
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Potri.018G131700 [exp]	10.77	0.8384
AT1G56090			Tetratricopeptide repeat (TPR)...		Potri.005G097300 [exp]	10.95	0.7703
AT5G23750			Remorin family protein (.1.2)		Potri.015G143600 [exp]	13.41	0.8245
AT3G49060			U-box domain-containing protei...		Potri.012G143100 [exp]	13.41	0.7829
AT4G03020			transducin family protein / WD...		Potri.010G026800 [exp]	15.36	0.7392

Compare expression of checked genes

Potri.013G120300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.