Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATRPABC16.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59600 228 / 4e-78 NRPE8B, NRPD8B, NRPB8B RNA polymerase Rpb8 (.1) AT1G54250 226 / 3e-77 NRPE8A, NRPB8A, ATRPABC16.5 RNA polymerase Rpb8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G120400 [exp] 148 / 9e-47 AT3G59600 135 / 1e-41 RNA polymerase Rpb8 (.1) Potri.013G072000 [exp] 141 / 7e-44 AT3G59600 138 / 1e-42 RNA polymerase Rpb8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013760 [exp] 245 / 2e-84 AT1G54250 230 / 1e-78 RNA polymerase Rpb8 (.1) Lus10039177 [exp] 244 / 2e-84 AT1G54250 230 / 6e-79 RNA polymerase Rpb8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF03870 [poplar] [flax] RNA_pol_Rpb8 RNA polymerase Rpb8
Representative CDS sequence Show only first row Show all	>Potri.013G120500.1 pacid=42812747 polypeptide=Potri.013G120500.1.p locus=Potri.013G120500 ID=Potri.013G120500.1.v4.1 annot-version=v4.1 ATGTCAAGCTCAAACATCATCATGTTTGAAGATATTTTTGTTGTTGACAAACTAGATCCTGACGGCAAAAAATTTGACAATGTGACCCGCATTGAAGCAC ATAGTCAGAACTGTGATATGTTCATGCACCTTGATGTGAACACTGATGTATACCCCATGTTCGTGAATGACAAATTCACAATGGCTTTGGCCCATACGCT GAATCTGGATGGGACACCTGACACAGGCTATTATACTCAGGGAGGGAGAAAAACACTCGCTGACAAATATGAATATGTCATGCATGGGAAGCTATATCAG ATTCAAGAGGAAGGATCAAGGAGGGCAACTCGAACGGAGATGGTTATTACATTTGGTGGGCTTCTGATGTTGTTGAAGGGAGATCCTTCATATGTCTCTC AATTCGAGCTTGATCAGAGGCTATTTTGTCTGATCAGGAAGCTGTGA
AA sequence Show only first row Show all	>Potri.013G120500.1 pacid=42812747 polypeptide=Potri.013G120500.1.p locus=Potri.013G120500 ID=Potri.013G120500.1.v4.1 annot-version=v4.1 MSSSNIIMFEDIFVVDKLDPDGKKFDNVTRIEAHSQNCDMFMHLDVNTDVYPMFVNDKFTMALAHTLNLDGTPDTGYYTQGGRKTLADKYEYVMHGKLYQ IQEEGSRRATRTEMVITFGGLLMLLKGDPSYVSQFELDQRLFCLIRKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59600		NRPE8B, NRPD8B,...	RNA polymerase Rpb8 (.1)		Potri.013G120500 [exp]	0	1	Pt-ATRPABC16.2
AT4G29160		SNF7.1	SNF7 family protein (.1.2.3)		Potri.018G069900 [exp]	1.41	0.7904
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Potri.006G185000 [exp]	2.82	0.7756	Pt-EIF.4
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Potri.005G109900 [exp]	4.24	0.7759
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.002G138400 [exp]	5.00	0.7741	RAB1.3
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Potri.008G089900 [exp]	8.48	0.7828
AT2G39445			Phosphatidylinositol N-acetylg...		Potri.002G134800 [exp]	10.48	0.7209
AT1G71950			Proteinase inhibitor, propepti...		Potri.019G083300 [exp]	12.64	0.7381
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Potri.018G110700 [exp]	14.24	0.7463
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Potri.015G052800 [exp]	15.90	0.7208	DR1.1
AT4G08240			unknown protein		Potri.002G086200 [exp]	16.24	0.7698

Compare expression of checked genes

Potri.013G120500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.