Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44130 182 / 2e-57 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT2G20520 181 / 1e-56 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT1G03870 175 / 2e-54 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT5G03170 140 / 7e-41 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT5G60490 117 / 8e-32 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT2G04780 89 / 3e-21 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT2G45470 66 / 2e-12 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 66 / 3e-12 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT3G46550 64 / 1e-11 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT5G55730 54 / 2e-08 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093300 [exp] 235 / 7e-78 AT5G44130 173 / 9e-54 FASCICLIN-like arabinogalactan protein 13 precursor (.1) Potri.016G088700 [exp] 142 / 1e-41 AT5G03170 203 / 2e-65 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.006G129200 [exp] 136 / 2e-39 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.015G129400 [exp] 117 / 4e-32 AT5G60490 206 / 2e-66 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G014966 [exp] 112 / 8e-30 AT5G60490 179 / 1e-55 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.009G012100 [exp] 112 / 9e-30 AT5G60490 167 / 3e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G127900 [exp] 110 / 2e-29 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G015032 [exp] 110 / 3e-29 AT5G60490 179 / 2e-55 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.001G320800 [exp] 109 / 6e-29 AT5G60490 189 / 5e-60 FASCICLIN-like arabinogalactan-protein 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033651 [exp] 194 / 1e-61 AT2G20520 234 / 2e-77 FASCICLIN-like arabinogalactan 6 (.1) Lus10017696 [exp] 182 / 3e-57 AT2G20520 244 / 2e-81 FASCICLIN-like arabinogalactan 6 (.1) Lus10019929 [exp] 133 / 4e-38 AT5G03170 295 / 2e-101 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10026499 [exp] 132 / 8e-38 AT5G03170 291 / 5e-100 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002978 [exp] 110 / 3e-29 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036111 [exp] 106 / 8e-28 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036114 [exp] 104 / 9e-27 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036115 [exp] 96 / 9e-24 AT5G03170 151 / 4e-45 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10007404 [exp] 96 / 4e-23 AT5G60490 142 / 6e-41 FASCICLIN-like arabinogalactan-protein 12 (.1) Lus10001733 [exp] 94 / 7e-23 AT2G04780 231 / 4e-76 FASCICLIN-like arabinoogalactan 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [poplar] [flax] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Potri.013G120600.1 pacid=42811575 polypeptide=Potri.013G120600.1.p locus=Potri.013G120600 ID=Potri.013G120600.1.v4.1 annot-version=v4.1 ATGGCTACCACTCCCCTGTCTTTCTTTCTCCTTTCACTCCTCTCCCTCTCCCTCAATGCTCAAGCTCAAACCCCGACAGCACCCGCCCCGACGCCCTCCG GCCCGGTTAACTTCACCGCAGTTCTTGTAAAGGGTGGACAGTTCGCCACACTCATTCGCCTTCTGAACAACACTCAAACTTTGAACCAAATTGAGAATCA GCTTAACAGCTCTTCTGAGGGCATGACTATCTTCGCCCCAACCGATAATGCGTTCAACAATCTGAAAGCTGGTGCTTTAAATGGCCTCAACCAACAAGAA CAAGTTCAGCTTCTTCAATACCACACGTTGCCTAAATTCTATACCATGAGCAATCTTTTGCTGGTTAGTAACCCTGTTCCCACTCAGGCCTCAGGCCAAG ATGGTGTCTGGGGTCTTAACTTCACTGGCCAAAGCAACCAAGTCAATGTATCAACAGGGCTTGTTGAGGTTCAAATTAACAACGCTTTAAGGCAAGATTC TCCTTTGGCAGTTTACCCAGTCGACAAAGTCTTGTTGCCCGAGGCATTGTTTGGTGTTAAGCCACCGACTGCATCACCTCCGGCACCATCAAGCAAGTCC AATTCAACAGTGGCGGCTGCAGAACCATCAACAGGTAAGAACTCAGCTGGTGGAAGGAATGTAGCATTGGGGTTGGTTGTTGGGCTCGGTTTGGTTTGCA TGGGAATTCTTTCTTGA
AA sequence Show only first row Show all	>Potri.013G120600.1 pacid=42811575 polypeptide=Potri.013G120600.1.p locus=Potri.013G120600 ID=Potri.013G120600.1.v4.1 annot-version=v4.1 MATTPLSFFLLSLLSLSLNAQAQTPTAPAPTPSGPVNFTAVLVKGGQFATLIRLLNNTQTLNQIENQLNSSSEGMTIFAPTDNAFNNLKAGALNGLNQQE QVQLLQYHTLPKFYTMSNLLLVSNPVPTQASGQDGVWGLNFTGQSNQVNVSTGLVEVQINNALRQDSPLAVYPVDKVLLPEALFGVKPPTASPPAPSSKS NSTVAAAEPSTGKNSAGGRNVALGLVVGLGLVCMGILS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44130		FLA13	FASCICLIN-like arabinogalactan...		Potri.013G120600 [exp]	0	1
AT2G44930			Plant protein of unknown funct...		Potri.005G008500 [exp]	1.41	0.9666
AT5G56790			Protein kinase superfamily pro...		Potri.001G035900 [exp]	8.00	0.9311
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Potri.006G275900 [exp]	15.87	0.9538
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.006G141400 [exp]	19.13	0.9450
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Potri.001G083400 [exp]	19.59	0.9350
AT2G47930		AGP26, ATAGP26	ARABIDOPSIS THALIANA ARABINOGA...		Potri.014G135100 [exp]	20.29	0.9441
AT2G29290			NAD(P)-binding Rossmann-fold s...		Potri.013G026000 [exp]	21.11	0.8813
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Potri.016G046701 [exp]	22.31	0.8751
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.014G083900 [exp]	23.45	0.9258	TAN1.1
AT2G14900			Gibberellin-regulated family p...		Potri.001G297700 [exp]	25.92	0.9419

Compare expression of checked genes

Potri.013G120600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.