Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-OOMT2.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 74 / 4e-16 O-methyltransferase family protein (.1) AT4G35150 59 / 7e-11 O-methyltransferase family protein (.1) AT5G54160 57 / 7e-10 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 46 / 3e-06 O-methyltransferase family protein (.1) AT1G51990 44 / 2e-05 O-methyltransferase family protein (.1.2) AT5G53810 43 / 3e-05 O-methyltransferase family protein (.1) AT1G77530 39 / 0.0007 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G120800 [exp] 317 / 6e-110 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 298 / 1e-102 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 291 / 9e-100 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 288 / 8e-99 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 274 / 4e-93 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 262 / 3e-88 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 226 / 3e-74 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 210 / 5e-68 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G121800 [exp] 178 / 2e-56 AT4G35160 158 / 7e-46 O-methyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033656 [exp] 181 / 2e-56 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017699 [exp] 173 / 2e-53 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10018628 [exp] 164 / 1e-49 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10018629 [exp] 150 / 8e-45 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10001510 [exp] 147 / 3e-43 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1) Lus10006692 [exp] 132 / 2e-37 AT4G35160 152 / 2e-42 O-methyltransferase family protein (.1) Lus10015311 [exp] 130 / 4e-37 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1) Lus10007035 [exp] 128 / 2e-36 AT4G35160 137 / 7e-38 O-methyltransferase family protein (.1) Lus10033653 [exp] 128 / 3e-36 AT4G35150 172 / 2e-50 O-methyltransferase family protein (.1) Lus10038331 [exp] 129 / 2e-35 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF08100 [poplar] [flax] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.013G120900.2 pacid=42811316 polypeptide=Potri.013G120900.2.p locus=Potri.013G120900 ID=Potri.013G120900.2.v4.1 annot-version=v4.1 ATGCTTCAAGCTCAATCTCATGTGTGGAATCATATATTCAACTTCATAAACTCCATGACTTTGAAATGTGCCGTTCAACTAGGCAAACCAGATGTGATCC AAAAACATGGCAAGCCCATGACCCTCTCGGAGCTTGTTTCTGCCCTACCGATCCACCCATCAAAAGCTCAATATGTCCACCGCCTTATGCGTGTTCTCGT GCACTCCGGTTTCTTTTTCCAGCAAAATCTTAATGGCATTCACAACCAAGAAGCCTATTCCCTTACCCAATCCACTCGTCTCCTCCTCAAGGACAATCCC TGGAGTGTGAGACCTCTTTTACTTCTGCTGCTCGACCCAGTTCTGACAAAACCATGGGATTGCTTGAGCACTTGGTTCCAAAATGATGATCGCAATGCAT TTAGTGTTGCCCATGAAAAGACAGTTTGGGAGTACGCTGGCCAAGATACAAGACTCAACAATCTCTTTAATGAAGCCATATCTAGCTAG
AA sequence Show only first row Show all	>Potri.013G120900.2 pacid=42811316 polypeptide=Potri.013G120900.2.p locus=Potri.013G120900 ID=Potri.013G120900.2.v4.1 annot-version=v4.1 MLQAQSHVWNHIFNFINSMTLKCAVQLGKPDVIQKHGKPMTLSELVSALPIHPSKAQYVHRLMRVLVHSGFFFQQNLNGIHNQEAYSLTQSTRLLLKDNP WSVRPLLLLLLDPVLTKPWDCLSTWFQNDDRNAFSVAHEKTVWEYAGQDTRLNNLFNEAISS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35160			O-methyltransferase family pro...		Potri.013G120900 [exp]	0	1	Pt-OOMT2.3
AT4G35160			O-methyltransferase family pro...		Potri.013G120800 [exp]	1.00	0.9932	FOMT11,OOMT2.19
AT4G35160			O-methyltransferase family pro...		Potri.013G122100 [exp]	1.41	0.9869
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.001G028600 [exp]	4.89	0.9272
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.005G181500 [exp]	7.21	0.9194
					Potri.009G114701 [exp]	7.93	0.9271
AT3G25810			Terpenoid cyclases/Protein pre...		Potri.001G308200 [exp]	9.38	0.9212
AT2G48140		EDA4	embryo sac development arrest ...		Potri.002G050200 [exp]	12.04	0.9300
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.007G114700 [exp]	13.41	0.9284
AT1G52140			unknown protein		Potri.001G188900 [exp]	13.78	0.9258
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Potri.010G111000 [exp]	14.96	0.9150	MLP43.1

Compare expression of checked genes

Potri.013G120900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.