Plant FIBer expression Database

Potri.013G121700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G27410 316 / 2e-107 DNA repair metallo-beta-lactamase family protein (.1)
AT2G45700 97 / 5e-23 sterile alpha motif (SAM) domain-containing protein (.1)
AT3G26680 92 / 4e-21 SNM1, ATSNM1 SENSITIVE TO NITROGEN MUSTARD 1, DNA repair metallo-beta-lactamase family protein (.1.2.3)
AT1G19025 76 / 1e-15 DNA repair metallo-beta-lactamase family protein (.1)
AT1G66730 69 / 4e-13 AtLIG6 DNA LIGASE 6 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G149650
[exp]
337 / 1e-116 AT1G27410 396 / 5e-137 DNA repair metallo-beta-lactamase family protein (.1)
Potri.014G139600
[exp]
96 / 1e-22 AT3G26680 556 / 0.0 SENSITIVE TO NITROGEN MUSTARD 1, DNA repair metallo-beta-lactamase family protein (.1.2.3)
Potri.006G218300
[exp]
90 / 1e-20 AT2G45700 732 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1)
Potri.013G121101
[exp]
77 / 3e-17 AT1G27410 95 / 8e-23 DNA repair metallo-beta-lactamase family protein (.1)
Potri.007G106700
[exp]
72 / 2e-14 AT1G19025 571 / 0.0 DNA repair metallo-beta-lactamase family protein (.1)
Potri.004G094200
[exp]
69 / 4e-13 AT1G66730 1656 / 0.0 DNA LIGASE 6 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038078
[exp]
96 / 2e-22 AT2G45700 767 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1)
Lus10033580
[exp]
73 / 1e-14 AT1G66730 456 / 1e-146 DNA LIGASE 6 (.1)
Lus10017623
[exp]
71 / 7e-14 AT1G66730 1584 / 0.0 DNA LIGASE 6 (.1)
Lus10013876
[exp]
53 / 5e-08 AT1G19025 478 / 7e-165 DNA repair metallo-beta-lactamase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0398 RMMBL_DRMBL PF07522 DRMBL DNA repair metallo-beta-lactamase
Representative CDS sequence
>Potri.013G121700.2 pacid=42812729 polypeptide=Potri.013G121700.2.p locus=Potri.013G121700 ID=Potri.013G121700.2.v4.1 annot-version=v4.1
ATGGCTCTCGACACCCACCATTGCCCTGGAGGGGTCATGTTTTTGTTTCGCGGGGAGTTTGGATGCTTGATGTATACGGGGGATTTTCAATGGGAAGTTG
ATAGCAAGAGGGCAAAGGATGCGAGGAGCAGGCTACTTAATGTTCTCAAGAATGAGACGGTTGATGTTCTTTACTTGGATAATACGTATTGTAATCCGTC
TTATGATTTTCCCACTCGAGAAGTTGCTGCTCAACAGGTTGTTGATATCATTGCTTCTCATCTGGAGCATGACATCGTTATTGGGATTGATACTTTGGGG
AAAGAAGAGCTTCTAATTCACATTTCACGTGTGCTTAACATAAAGATTTGGTTGTGGCTAGAGCGTTTACAAACCATGCATCTTCTTGGATTCCATGACA
CATTCACAACTAAAAATTCTCTAACAAGAGTCCGAGCAGTTCCTTGTTACAGTCTCAGCGTTGAAACTTTAGAGGGATTAAACACAATGCGGCCAACAAT
AGGAATCATGCCATCTGGTCTTCCATGGGTGCTGAAACATGTTAAAGGAGATGACAATCTTTTCGGTTCTCTCTTAACTTCTCGTTACAAAAAAAAACAG
CCGTCTGATAAGTTGGACGGTAATTTAGCATATGCAGAAAGGTATCACCAGTACATGTTTTCAGTTCCTTACTCTGATCACTTATGCTTTGCAGAGTCCA
ACCAACTAACATGA
AA sequence
>Potri.013G121700.2 pacid=42812729 polypeptide=Potri.013G121700.2.p locus=Potri.013G121700 ID=Potri.013G121700.2.v4.1 annot-version=v4.1
MALDTHHCPGGVMFLFRGEFGCLMYTGDFQWEVDSKRAKDARSRLLNVLKNETVDVLYLDNTYCNPSYDFPTREVAAQQVVDIIASHLEHDIVIGIDTLG
KEELLIHISRVLNIKIWLWLERLQTMHLLGFHDTFTTKNSLTRVRAVPCYSLSVETLEGLNTMRPTIGIMPSGLPWVLKHVKGDDNLFGSLLTSRYKKKQ
PSDKLDGNLAYAERYHQYMFSVPYSDHLCFAESNQLT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G27410 DNA repair metallo-beta-lactam... Potri.013G121700
[exp]
0 1
AT1G27410 DNA repair metallo-beta-lactam... Potri.013G121101
[exp]
8.48 0.7100
Potri.011G160250
[exp]
15.29 0.7598
AT1G78800 UDP-Glycosyltransferase superf... Potri.001G393000
[exp]
15.77 0.7511
AT3G22520 unknown protein Potri.010G086700
[exp]
25.09 0.7365
AT5G57070 hydroxyproline-rich glycoprote... Potri.006G145900
[exp]
29.73 0.7190
AT1G31200 ATPP2-A9 phloem protein 2-A9 (.1) Potri.015G119100
[exp]
31.78 0.7426
AT5G05670 signal recognition particle bi... Potri.009G001600
[exp]
32.52 0.7102
AT1G78100 AUF1 auxin up-regulated f-box prote... Potri.001G021500
[exp]
45.03 0.7245
Potri.014G064900
[exp]
47.83 0.6934
AT5G10530 Concanavalin A-like lectin pro... Potri.001G283200
[exp]
54.19 0.7253

Potri.013G121700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.