Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 184 / 7e-55 O-methyltransferase family protein (.1) AT4G35150 182 / 2e-54 O-methyltransferase family protein (.1) AT5G54160 169 / 5e-49 ATOMT1 O-methyltransferase 1 (.1) AT1G51990 157 / 1e-44 O-methyltransferase family protein (.1.2) AT1G77520 151 / 2e-42 O-methyltransferase family protein (.1) AT1G63140 139 / 1e-37 O-methyltransferase family protein (.1.2) AT1G77530 137 / 6e-37 O-methyltransferase family protein (.1) AT5G53810 134 / 6e-36 O-methyltransferase family protein (.1) AT1G33030 132 / 3e-35 O-methyltransferase family protein (.1) AT3G53140 130 / 9e-35 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G121300 [exp] 673 / 0 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 665 / 0 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 654 / 0 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 650 / 0 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 616 / 0 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.013G121800 [exp] 526 / 0 AT4G35160 158 / 7e-46 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 483 / 4e-172 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 477 / 6e-170 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 386 / 5e-134 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033656 [exp] 422 / 6e-148 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017699 [exp] 420 / 4e-147 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10018628 [exp] 412 / 8e-144 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10018629 [exp] 390 / 1e-135 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10001510 [exp] 367 / 5e-126 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1) Lus10017691 [exp] 334 / 3e-113 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10038331 [exp] 331 / 1e-109 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1) Lus10013945 [exp] 318 / 4e-107 AT4G35160 181 / 1e-53 O-methyltransferase family protein (.1) Lus10015311 [exp] 311 / 2e-104 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1) Lus10032304 [exp] 302 / 8e-101 AT4G35160 170 / 2e-49 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00891 [poplar] [flax] Methyltransf_2 O-methyltransferase domain CL0123 [poplar] [flax] HTH PF08100 [poplar] [flax] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.013G121900.1 pacid=42812762 polypeptide=Potri.013G121900.1.p locus=Potri.013G121900 ID=Potri.013G121900.1.v4.1 annot-version=v4.1 ATGGAGTTGATTAACGAGGAAAGTGCTGGTGAGCTGCTTCAAGCTCAAACTCATGTGTGGAATCATATATTCTGCTTCATAAACTCCATGACTCTGAAAT GTGCCGTTCAACTAGGCATACCAGATGTGATCCAAAAACATGGCAAACCCATGACCCTCTCGGAGCTTGTTTCTGCCCTACCGATCCACCCATCAAAAGC TCAGTATGTCCACCGCCTTATGCGTATTCTCGTGCACTCCGGTTTCTTTTCCCAGCAAAATCTTAACCAAGAAGCCTATTCCCTTACCCAATCCACTCGT CTCCTACTCAAGGACAATCCCTGGAGTATGAGAACTCTTTTACTTTTTGTGCTAGACCCAGTTCTGACAAAACCGCATGATTGCTTGAGCACTTGGTTCC GAAATGATGAAGCCACCGCATTTAGTATTGCCCATGAAAGTATATTTTGGGAGTACGCTGGCCAAGATTCAAGAATCAACAATCTCTTTAATGATGCCAT GGCTAGTGATAGCATACTAGTTAGTAAGGTGGTTGTAAGCAAATGTAAAGGCATCTTTGAGGGGGTGAATTCTTTGGTGGATGTAGGGGGAGGCTTAGGA ACTATGGCCAAGGGCATCGCAGAAGCATTTCCGCACATGGACTGCACTGTGTTTGATCTCCCGCGTGTGGTTTCTGACTTGCAAGGCAGCAAAAACTTGA AGTATGTTGGAGGGGATATGTTTGAGGCAGTTCCTCCTGCAGATGTAATTTTACTCAAGTGGATACTGCATGCCTGGAGTGACGAAGACTGCGTGAAAAT ACTTAAACGATGCAAACAAGCAATTATGAGTGAGGGACAGCAGAAAGCTGGGAAGGTGATAATTATAGATATGGTGAGAGAGAACCTGAATGGAGACGGA GGGTCAATTGAAACGCAGCTGTTTTTTGATCTACAAATGATGGTGGCTGCTACTGGCATGGAGAGAAATGAAAAGGAGTGGGCTAAGCTCTTCTTTGATG CTGGTTTCCTCAATTATAAGATACACCCTGTGCTTGGCACAAGAGCTCTCATTGAGCTTTATCCTTGA
AA sequence Show only first row Show all	>Potri.013G121900.1 pacid=42812762 polypeptide=Potri.013G121900.1.p locus=Potri.013G121900 ID=Potri.013G121900.1.v4.1 annot-version=v4.1 MELINEESAGELLQAQTHVWNHIFCFINSMTLKCAVQLGIPDVIQKHGKPMTLSELVSALPIHPSKAQYVHRLMRILVHSGFFSQQNLNQEAYSLTQSTR LLLKDNPWSMRTLLLFVLDPVLTKPHDCLSTWFRNDEATAFSIAHESIFWEYAGQDSRINNLFNDAMASDSILVSKVVVSKCKGIFEGVNSLVDVGGGLG TMAKGIAEAFPHMDCTVFDLPRVVSDLQGSKNLKYVGGDMFEAVPPADVILLKWILHAWSDEDCVKILKRCKQAIMSEGQQKAGKVIIIDMVRENLNGDG GSIETQLFFDLQMMVAATGMERNEKEWAKLFFDAGFLNYKIHPVLGTRALIELYP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35160			O-methyltransferase family pro...		Potri.013G121900 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.003G099100 [exp]	6.00	0.9247
AT2G22590			UDP-Glycosyltransferase superf...		Potri.012G034100 [exp]	6.63	0.8996
AT1G12890	AP2_ERF		Integrase-type DNA-binding sup...		Potri.019G088000 [exp]	8.60	0.9200	ERF62
					Potri.003G092900 [exp]	16.61	0.9090
AT5G15500			Ankyrin repeat family protein ...		Potri.018G050600 [exp]	16.97	0.8511
AT5G44440			FAD-binding Berberine family p...		Potri.001G462000 [exp]	17.14	0.9139
AT4G37420			Domain of unknown function (DU...		Potri.005G252100 [exp]	23.49	0.8985
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.005G246400 [exp]	25.39	0.9093
AT5G05340			Peroxidase superfamily protein...		Potri.016G132700 [exp]	25.98	0.8530
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.002G042100 [exp]	27.74	0.8661	Pt-CYP94.3

Compare expression of checked genes

Potri.013G121900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.