Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) AT4G35150 166 / 1e-48 O-methyltransferase family protein (.1) AT5G54160 135 / 2e-36 ATOMT1 O-methyltransferase 1 (.1) AT1G51990 132 / 3e-35 O-methyltransferase family protein (.1.2) AT1G77520 130 / 3e-34 O-methyltransferase family protein (.1) AT1G77530 129 / 5e-34 O-methyltransferase family protein (.1) AT5G53810 117 / 2e-29 O-methyltransferase family protein (.1) AT1G63140 115 / 5e-29 O-methyltransferase family protein (.1.2) AT3G53140 111 / 1e-27 O-methyltransferase family protein (.1) AT1G21130 110 / 5e-27 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G121900 [exp] 578 / 0 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 570 / 0 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 567 / 0 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 560 / 0 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 551 / 0 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G121800 [exp] 414 / 3e-146 AT4G35160 158 / 7e-46 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 415 / 2e-145 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 409 / 4e-143 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 348 / 1e-118 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033656 [exp] 358 / 1e-122 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10018629 [exp] 351 / 5e-120 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10017699 [exp] 350 / 1e-119 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10018628 [exp] 349 / 3e-119 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10001510 [exp] 322 / 1e-108 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1) Lus10017691 [exp] 285 / 8e-94 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10038331 [exp] 283 / 3e-91 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1) Lus10013945 [exp] 270 / 2e-88 AT4G35160 181 / 1e-53 O-methyltransferase family protein (.1) Lus10015311 [exp] 268 / 1e-87 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1) Lus10033653 [exp] 265 / 3e-86 AT4G35150 172 / 2e-50 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00891 [poplar] [flax] Methyltransf_2 O-methyltransferase domain CL0123 [poplar] [flax] HTH PF08100 [poplar] [flax] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.013G122000.1 pacid=42811712 polypeptide=Potri.013G122000.1.p locus=Potri.013G122000 ID=Potri.013G122000.1.v4.1 annot-version=v4.1 ATGGAGTTGATTAACGAGGAAAGTGCTGGTGAGCTGCTTCAAGCTCAAACTCATGTGTGGAATCATATATTCAACTTCATAAACTCCATGACTCTGAAAT GTGCCGTTCAACTAGGCATACCAGATGTGATCCAAAAACATGGCAAACCCATGACCCTCTCGGAGCTTGTTTCTGCCCTACCGATCCACCCATCAAAAGC TCAATATGTCCACCGCCTTATGCGTATTCTCGTGCACTCCGGTTTCTTTTCCCAGCAAAATCTCAACCAAGAAGCCTATTCCCTTACCCAATCCACTCGT CTGCTTCTCAAGGATAACCCCTTGAGTATGAGACCTCTTTTACTTATGTTGCTCGATCCAGTTCTGACAAAACCCCATGATTGCTTGAGCACTTGGTTCC AAAATGATGAAGCCACCGCATTTAGTGTTGCCCATGAAAGGACACTTTGGGAGTACGCTGGCCAAGATCCAAGGCTCAGCAATCTCTTTAATGAAGCCAT GGCTAGTGATAGCATACTGGCTAGCAAGCTGGTTTTAAACCAATGCAAAGGCATCTTTGATGGGGTGGATTCCTTGGTGGATGTCGGGGGAGGCTCAGGA ACCATGGCCAAGGGCATCGCAGAAGCATTTCCGCACATGGACTGCACTGTGTTTGATCTCCCGCGTGTGGTTTCTGACTTGCAAGGCAGCAAAAACTTGA AGTATGTTGGAGGGGATATGTTTGAGGCAGTTCCTGCTGCAGATGTAATTTTACTCAAGTGGACACTGCATGACTGGAGTGATGAAGACTGCGTGAAAAT ACTAAAGCAATGCAAACATGCAATTATGAGTAAGGGCCAGCAGAAAGCTGGGAAGGTGATAATCATAGACATAGTGAGAGAGAGCCAAAATGGCGAGGAG TCAAATGAAACGCAGCTGCTTTGGGATCTAGAAATGATGGTGACTGTTACTGGCCTAGAAAGGAATGAAATGGAGTGGGCTAAGCTCTTCTTTGATGCAG GTTTCGTCAGCTATAAGATACATAACGTGCTTGGCACAAGAGCTCTCATTGAGCTTCATCCTTGA
AA sequence Show only first row Show all	>Potri.013G122000.1 pacid=42811712 polypeptide=Potri.013G122000.1.p locus=Potri.013G122000 ID=Potri.013G122000.1.v4.1 annot-version=v4.1 MELINEESAGELLQAQTHVWNHIFNFINSMTLKCAVQLGIPDVIQKHGKPMTLSELVSALPIHPSKAQYVHRLMRILVHSGFFSQQNLNQEAYSLTQSTR LLLKDNPLSMRPLLLMLLDPVLTKPHDCLSTWFQNDEATAFSVAHERTLWEYAGQDPRLSNLFNEAMASDSILASKLVLNQCKGIFDGVDSLVDVGGGSG TMAKGIAEAFPHMDCTVFDLPRVVSDLQGSKNLKYVGGDMFEAVPAADVILLKWTLHDWSDEDCVKILKQCKHAIMSKGQQKAGKVIIIDIVRESQNGEE SNETQLLWDLEMMVTVTGLERNEMEWAKLFFDAGFVSYKIHNVLGTRALIELHP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35160			O-methyltransferase family pro...		Potri.013G122000 [exp]	0	1
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.005G248500 [exp]	1.41	0.9346	Ptr4CL14
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Potri.006G115000 [exp]	2.44	0.9069
AT2G35610		XEG113	xyloglucanase 113 (.1)		Potri.004G235800 [exp]	3.87	0.8883
AT5G50760			SAUR-like auxin-responsive pro...		Potri.003G167400 [exp]	4.00	0.8577	SAUR1
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.008G183600 [exp]	4.47	0.8661
AT4G04720		CPK21	calcium-dependent protein kina...		Potri.011G003400 [exp]	5.29	0.8845
AT1G03370			C2 calcium/lipid-binding and G...		Potri.006G003200 [exp]	6.00	0.8870
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145530 [exp]	6.00	0.8944
AT1G79740			hAT transposon superfamily (.1...		Potri.018G135702 [exp]	7.21	0.8592
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145540 [exp]	7.74	0.8579

Compare expression of checked genes

Potri.013G122000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.