Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 188 / 3e-56 O-methyltransferase family protein (.1) AT4G35150 179 / 1e-53 O-methyltransferase family protein (.1) AT5G54160 176 / 1e-51 ATOMT1 O-methyltransferase 1 (.1) AT1G51990 160 / 6e-46 O-methyltransferase family protein (.1.2) AT1G77520 157 / 1e-44 O-methyltransferase family protein (.1) AT5G53810 139 / 1e-37 O-methyltransferase family protein (.1) AT1G63140 138 / 2e-37 O-methyltransferase family protein (.1.2) AT3G53140 136 / 6e-37 O-methyltransferase family protein (.1) AT1G77530 135 / 2e-36 O-methyltransferase family protein (.1) AT1G33030 129 / 3e-34 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G121400 [exp] 669 / 0 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 669 / 0 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 657 / 0 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 650 / 0 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 588 / 0 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.013G121800 [exp] 519 / 0 AT4G35160 158 / 7e-46 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 484 / 2e-172 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 472 / 7e-168 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 386 / 8e-134 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033656 [exp] 423 / 2e-148 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017699 [exp] 414 / 1e-144 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10018628 [exp] 411 / 2e-143 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10018629 [exp] 402 / 5e-140 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10001510 [exp] 377 / 3e-130 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1) Lus10017691 [exp] 342 / 3e-116 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10038331 [exp] 327 / 5e-108 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1) Lus10015311 [exp] 318 / 3e-107 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1) Lus10013945 [exp] 316 / 2e-106 AT4G35160 181 / 1e-53 O-methyltransferase family protein (.1) Lus10006692 [exp] 298 / 4e-99 AT4G35160 152 / 2e-42 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00891 [poplar] [flax] Methyltransf_2 O-methyltransferase domain CL0123 [poplar] [flax] HTH PF08100 [poplar] [flax] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.013G122400.1 pacid=42811317 polypeptide=Potri.013G122400.1.p locus=Potri.013G122400 ID=Potri.013G122400.1.v4.1 annot-version=v4.1 ATGGAGTTGATTAACGAGGAAAGTGCTAGCGAGCTACTTCAAGCTCAAACTCATGTGTGGAATCATATATTCTACTTTATAAACTCCATGACTTTGAAAT GTGCTGTTCAACTAGGCATACCAGATGTGATCCAAAAACATGGCAAACCCATGACCCTCTCTGAGCTTGTTTCTGCCCTACCAATCCACCCATCAAAAGC TCAATATGTCCACCGCCTTATGCGTATTCTCGTGCACTCTGGTTTCTTTTCCCAGCGAAATCTTAACGGCGTTGACAACCAAGAAGCCTATTCCCTTACC CAATCCACTCGTCTCCTACTCAAGGACAATCCCTGGAGTGTGAGAGCTCATTTACTTTTTGTGCTCGACCCAGTTCTGACAAAACCATGGGATTGCTTGA GCACTTGGTTCCAAAATGATGATCGCACTGCATTTAGTGTTGCCCATGAAAAGGCACCTTGGGAGTACGTTGGCCAAGATCCAAGAATCAACAATCTCTG TAATGAGGTCATGGCTAGAGATAGCATACTGGCTTGTAAGTTGGTTGTAAACAAATGTAAAGGCATCTTTGAGGGGGTGAGTTCTTTGGTGGATGTCGGG GGAGGCATAGGAACTATGGCCAAGGGCATCACTGAAGCATTTCCCCACATGGACTGCACTGTGCTTGATCTCCCCCATGTGGTTTCTGACTTGCAAGGAT GCAAAAATTTGAAGTATGTAGCGGGGGATATGTTTCAGGCAGTTCCTCCAGCAGAAGCAATTTTACTCAAGTGGATGCTACATAACTGGAGTGATGAAGA CTGCGTGAAAATACTTAAACGATGCAAACAAGCAATTATGAGTAAGGGACAACAGAAAGCTGGGAAGGTGATAATTATAGATATGGTGAGAGAGAACCTG AATGGAGATGAGGGGTCAATTGAAACGCAGCTGTTTTTTGATCTACAAATGATGGTGGTTGTTGGTGGCATGGAGAGAAATGAAAAGGAGTGGGCTAAGC TCTTCTTTGATGCTGGTTTCCTCAATTATAAGATACACCCTGTGCTAGGCACAAGAGCTCTCATTGAGCTTTATCCTTGA
AA sequence Show only first row Show all	>Potri.013G122400.1 pacid=42811317 polypeptide=Potri.013G122400.1.p locus=Potri.013G122400 ID=Potri.013G122400.1.v4.1 annot-version=v4.1 MELINEESASELLQAQTHVWNHIFYFINSMTLKCAVQLGIPDVIQKHGKPMTLSELVSALPIHPSKAQYVHRLMRILVHSGFFSQRNLNGVDNQEAYSLT QSTRLLLKDNPWSVRAHLLFVLDPVLTKPWDCLSTWFQNDDRTAFSVAHEKAPWEYVGQDPRINNLCNEVMARDSILACKLVVNKCKGIFEGVSSLVDVG GGIGTMAKGITEAFPHMDCTVLDLPHVVSDLQGCKNLKYVAGDMFQAVPPAEAILLKWMLHNWSDEDCVKILKRCKQAIMSKGQQKAGKVIIIDMVRENL NGDEGSIETQLFFDLQMMVVVGGMERNEKEWAKLFFDAGFLNYKIHPVLGTRALIELYP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35160			O-methyltransferase family pro...		Potri.013G122400 [exp]	0	1
					Potri.007G119100 [exp]	4.47	0.9429
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.001G312300 [exp]	6.00	0.9498
AT1G69320		CLE10	CLAVATA3/ESR-RELATED 10 (.1)		Potri.008G093500 [exp]	9.16	0.9375
AT1G79770			Protein of unknown function (D...		Potri.001G188700 [exp]	9.38	0.9327
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014302 [exp]	12.72	0.9323
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Potri.017G054500 [exp]	13.49	0.9117
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014306 [exp]	14.49	0.9301
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Potri.008G152300 [exp]	17.00	0.9069
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Potri.001G251100 [exp]	17.54	0.9213
AT2G46970	bHLH	PIL1, bHLH124	phytochrome interacting factor...		Potri.014G111400 [exp]	24.33	0.9076

Compare expression of checked genes

Potri.013G122400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.