Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28520 480 / 1e-167 VOZ ATVOZ1, VOZ1 vascular plant one zinc finger protein (.1.2) AT2G42400 448 / 1e-155 VOZ ATVOZ2, VOZ2 vascular plant one zinc finger protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G092800 [exp] 781 / 0 AT1G28520 501 / 1e-175 vascular plant one zinc finger protein (.1.2) Potri.004G050900 [exp] 513 / 2e-180 AT1G28520 689 / 0.0 vascular plant one zinc finger protein (.1.2) Potri.011G060000 [exp] 504 / 4e-177 AT1G28520 682 / 0.0 vascular plant one zinc finger protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005274 [exp] 407 / 6e-137 AT1G28520 529 / 0.0 vascular plant one zinc finger protein (.1.2) Lus10017700 [exp] 395 / 9e-135 AT1G28520 345 / 7e-115 vascular plant one zinc finger protein (.1.2) Lus10033657 [exp] 392 / 1e-133 AT1G28520 339 / 1e-112 vascular plant one zinc finger protein (.1.2) Lus10013950 [exp] 307 / 3e-103 AT1G28520 371 / 6e-128 vascular plant one zinc finger protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G123100.1 pacid=42812476 polypeptide=Potri.013G123100.1.p locus=Potri.013G123100 ID=Potri.013G123100.1.v4.1 annot-version=v4.1 ATGCAGAAAGGTAAAAAGAGTAAATGCACATCTATGTCGCACCATCTGTTGATGGACAATGCAAAAACCCGGCTAAATGATCTTCATGAAAGGTTCTCTA ACCTTCAAGCTGCAAGGAAAGAGGGGTGGAATAGTGATGTTGCTGTGTTGGAGGAGCAGGTGTATCAAGGTCTTCGTGAGTGGAAAGCTGAGCTTGATGT GCCATCACCTGCCAATTCTTTGCTTGATATCAGTCTGGGATCCTTTTCAGATGATATAGGCCGCTTGTTACAATTGTACGAGGAAGAAGATGATGCCACA AGTCCACTAACAATGCAGTCAGTTTTGAAGCCAGAAATGCAGCCCGAGCCCAATTTTCAAAACCTTAATCCTGGCAATTTAACAACATTTCAACATGCAT ATTTGGTAAATAGTCATGGTCAGGGGCTTGGTTTTCAAGGGTTTCATCAACCCAACAGCTCCGCCTCTGGTTTGCAAAATGTAGTGGTTAGCGCCCCCGA TATAACTACTTTATTGGATTGTCAACAGTTCACTTTGGATGAAGAATTTGACCCTGGGCTTTTTGGTGGAACTAATGACATTGAAGAGTGTGGAAAAAAT GCTGAGAGTAACAATCTGCAGTATATCAGCCCTCCACCTTCTGCTTTTATGGGGCCCAAATGTGCATTATGGGACTGCACCAGGCCTGCTCAAGTAGCCG AATGGTTAGAGGACTACTGTAGCAGCTTTCACGCTACCCTGGCCTTAAATGAAGGTCCCCCTGGCATGGCCCCAGTTTTGCGGCCTAGAGGCATTAATTT GAAGGATAATTTACTATTTGACGCCCTTATTGCAAAGATGCAGGGTAAGAATGTTGGTATTCCTCAATGTGAAGGGGCTGCTGTCATGAAATCCCCATGG AATGCTGCTGAACTATTTGATCTCTCATTACTCGATGGTGAAACAATTAGGGAGTGGCTCTTTTTTGACAAGCCTAGAAGGGCGTTTGACAGCGGAAATA GGAAGCAGAGGTCGTTGCCAGACTACACTGGCCGTGGTTGGCATGAATCAAGAAAGCAGGTGATGAAGGAGCTTGGGGGCCAGAAGAAATCCTATTATAT GGACCCACAACCTCCAGGCTGTCATGAGTGGCATTTATTTGAATATGAGATCCACAAATGCGATTTATGTGCATTATATAGGTTAGAACTCAAGCTTGCT AATGGAAAGAGGTCTCCGAAAGGAAAAGTTTCAAAGGATCCACTCGCTGATTTGCAGAAGAAAATGGGAAGGCTCACTGCTGTTGTAACTGCGGATAATG GCCCCCCTCTTAAGGGAAAGACAAAGGCTGATAGAGAAAACTGA
AA sequence Show only first row Show all	>Potri.013G123100.1 pacid=42812476 polypeptide=Potri.013G123100.1.p locus=Potri.013G123100 ID=Potri.013G123100.1.v4.1 annot-version=v4.1 MQKGKKSKCTSMSHHLLMDNAKTRLNDLHERFSNLQAARKEGWNSDVAVLEEQVYQGLREWKAELDVPSPANSLLDISLGSFSDDIGRLLQLYEEEDDAT SPLTMQSVLKPEMQPEPNFQNLNPGNLTTFQHAYLVNSHGQGLGFQGFHQPNSSASGLQNVVVSAPDITTLLDCQQFTLDEEFDPGLFGGTNDIEECGKN AESNNLQYISPPPSAFMGPKCALWDCTRPAQVAEWLEDYCSSFHATLALNEGPPGMAPVLRPRGINLKDNLLFDALIAKMQGKNVGIPQCEGAAVMKSPW NAAELFDLSLLDGETIREWLFFDKPRRAFDSGNRKQRSLPDYTGRGWHESRKQVMKELGGQKKSYYMDPQPPGCHEWHLFEYEIHKCDLCALYRLELKLA NGKRSPKGKVSKDPLADLQKKMGRLTAVVTADNGPPLKGKTKADREN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.013G123100 [exp]	0	1
AT1G17620			Late embryogenesis abundant (L...		Potri.003G039400 [exp]	2.00	0.8893
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Potri.001G129700 [exp]	2.44	0.8768
AT2G15560			Putative endonuclease or glyco...		Potri.004G140400 [exp]	4.00	0.8663
AT5G24870			RING/U-box superfamily protein...		Potri.006G274700 [exp]	4.12	0.8347
AT1G20110			RING/FYVE/PHD zinc finger supe...		Potri.005G242700 [exp]	6.32	0.8453
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Potri.006G134000 [exp]	7.87	0.8209
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Potri.009G105600 [exp]	8.36	0.8646
AT2G35530	bZIP	AtbZIP16	basic region/leucine zipper tr...		Potri.003G097600 [exp]	8.36	0.8405
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Potri.014G081100 [exp]	9.79	0.8304
AT4G26450		WIP1	unknown protein		Potri.001G472600 [exp]	10.00	0.8285

Compare expression of checked genes

Potri.013G123100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.