Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47790 135 / 2e-36 ABCA8, ATATH7 ATP-binding cassette A8, ABC2 homolog 7 (.1) AT3G47740 131 / 7e-35 ATATH2, ABCA3 A. THALIANA ABC2 HOMOLOG 2, ATP-binding cassette A3, ABC2 homolog 2 (.1) AT3G47780 129 / 3e-34 ABCA7, ATATH6 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) AT5G61740 123 / 3e-32 ABCA10, ATATH14 ARABIDOPSIS THALIANA ABC2 HOMOLOG 14, ATP-binding cassette A10, ABC2 homolog 14 (.1) AT3G47760 120 / 4e-31 ATATH4, ABCA5 A. THALIANA ABC2 HOMOLOG 4, ATP-binding cassette A5, ABC2 homolog 4 (.1) AT5G61700 118 / 3e-30 ABCA12, ATATH16 ARABIDOPSIS THALIANA ABC2 HOMOLOG 16, ATP-binding cassette A12, ABC2 homolog 16 (.1) AT3G47750 115 / 2e-29 ATATH3, ABCA4 ATP-binding cassette A4, ATP binding cassette subfamily A4 (.1) AT3G47770 109 / 3e-27 ATATH5, ABCA6 A. THALIANA ABC2 HOMOLOG 5, ATP-binding cassette A6, ABC2 homolog 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G069700 [exp] 179 / 8e-52 AT3G47780 1139 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.015G063400 [exp] 160 / 7e-45 AT3G47780 1145 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023612 [exp] 137 / 7e-37 AT3G47780 1202 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Lus10024243 [exp] 112 / 3e-28 AT3G47780 530 / 1e-178 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G123401.2 pacid=42811873 polypeptide=Potri.013G123401.2.p locus=Potri.013G123401 ID=Potri.013G123401.2.v4.1 annot-version=v4.1 ATGTTCCATACTGATGTTGTCCTGGGATCATCTTCAGAACCTAGTCGGGGCTACTTTGTTGATTCTGCTTTCTTCGGAAAGGATTCTCCTCTCTATAACA TTCAAAGTCAGTGTGGATCGAACTCTACGATATCTGTTTCTGTTCCTATTCCTCGGTCATCCTTAAAATCCCAGAAAGATGCGGTATGTGTTCGAAGTCT AAATTTGTGTTGTGAATCTTCTCTCGAAATAAATAGCCAGATATACATGGGCAATGAAAAAGGGAATGCAGAAGGCAAGTCGAATGAGATACTTGGAGCA TATGATTTCCTATACTCCAATGGTACTAATTTCAATGTGAATGTCTGGTACAACGCCTCCTATAAGGATGCTCCTGCTCTGCGGTTACCACGAGCAGTGA ATCTGGTAACAAATGCTTACCTTCAGTTGTTTAAAGGGCTTGGTGCAAAAGTGACGTTAGGATTTATCAAGGAAATGCCTAAAACTTCAAACGCTCTAAT CAAGTTTGATATCGATCGCTTCTCAAATGGGCACCCTCTTCTTTACATGGGTTATTTTACAACTATTCCCTGGAGAGAGCACTTACTATTTTACGGAAGA CTGAAGAACCTAAAAGGTTCTGCTTTGAAAAGAGGAGGCATTATCATCTTAGCTTTAAGCTTGTCAAAGATCATTTACTTTCTTTAA
AA sequence Show only first row Show all	>Potri.013G123401.2 pacid=42811873 polypeptide=Potri.013G123401.2.p locus=Potri.013G123401 ID=Potri.013G123401.2.v4.1 annot-version=v4.1 MFHTDVVLGSSSEPSRGYFVDSAFFGKDSPLYNIQSQCGSNSTISVSVPIPRSSLKSQKDAVCVRSLNLCCESSLEINSQIYMGNEKGNAEGKSNEILGA YDFLYSNGTNFNVNVWYNASYKDAPALRLPRAVNLVTNAYLQLFKGLGAKVTLGFIKEMPKTSNALIKFDIDRFSNGHPLLYMGYFTTIPWREHLLFYGR LKNLKGSALKRGGIIILALSLSKIIYFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47790		ABCA8, ATATH7	ATP-binding cassette A8, ABC2 ...		Potri.013G123401 [exp]	0	1
					Potri.005G135601 [exp]	6.00	0.8965
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Potri.010G228766 [exp]	7.74	0.8945
AT3G62900			CW-type Zinc Finger (.1)		Potri.005G028700 [exp]	8.83	0.8740
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.016G063300 [exp]	10.39	0.8809
					Potri.010G228883 [exp]	12.12	0.8853
					Potri.008G007100 [exp]	12.64	0.8604
					Potri.004G212900 [exp]	13.22	0.8594
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.005G010133 [exp]	16.30	0.8449
AT1G72300			Leucine-rich receptor-like pro...		Potri.003G074000 [exp]	17.94	0.8394
AT5G06350			ARM repeat superfamily protein...		Potri.011G095700 [exp]	18.76	0.8788

Compare expression of checked genes

Potri.013G123401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.