Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06290 1062 / 0 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) AT1G06310 1028 / 0 ACX6 acyl-CoA oxidase 6 (.1) AT5G65110 339 / 9e-107 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) AT3G06690 252 / 5e-80 acyl-CoA oxidases;oxidoreductases, acting on the CH-CH group of donors;FAD binding;oxidoreductases;acyl-CoA oxidases (.1) AT4G16760 243 / 4e-71 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) AT2G35690 235 / 5e-68 ACX5 acyl-CoA oxidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G092600 [exp] 1284 / 0 AT1G06290 1070 / 0.0 acyl-CoA oxidase 3 (.1) Potri.007G090400 [exp] 343 / 4e-108 AT5G65110 1203 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.005G077600 [exp] 341 / 1e-107 AT5G65110 1179 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.003G079200 [exp] 230 / 3e-66 AT4G16760 1143 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.001G155500 [exp] 229 / 1e-65 AT4G16760 1152 / 0.0 acyl-CoA oxidase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039894 [exp] 1089 / 0 AT1G06290 1036 / 0.0 acyl-CoA oxidase 3 (.1) Lus10016249 [exp] 1001 / 0 AT1G06290 965 / 0.0 acyl-CoA oxidase 3 (.1) Lus10002177 [exp] 797 / 0 AT1G06290 754 / 0.0 acyl-CoA oxidase 3 (.1) Lus10041711 [exp] 330 / 2e-103 AT5G65110 1199 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10024038 [exp] 271 / 1e-81 AT5G65110 1122 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10004386 [exp] 234 / 1e-67 AT4G16760 1107 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10040183 [exp] 234 / 4e-67 AT4G16760 1051 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10007815 [exp] 229 / 3e-66 AT4G16760 1019 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004745 [exp] 230 / 4e-66 AT4G16760 1112 / 0.0 acyl-CoA oxidase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0087 [poplar] [flax] Acyl-CoA_dh PF00441 [poplar] [flax] Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain CL0087 [poplar] [flax] Acyl-CoA_dh PF01756 [poplar] [flax] ACOX Acyl-CoA oxidase CL0087 [poplar] [flax] PF02770 [poplar] [flax] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
Representative CDS sequence Show only first row Show all	>Potri.013G123500.1 pacid=42811953 polypeptide=Potri.013G123500.1.p locus=Potri.013G123500 ID=Potri.013G123500.1.v4.1 annot-version=v4.1 ATGGCGCAAGAATCATCAATCAACACAGCTTCACGTAGAACCAGAATACTAAACAACCATCTTGTTCAATCTCCTTCAAAACCCACTTCTTGTCTTCAAT CAAATTCTTGTTTAAGCTACTCCCCACCAGAACTAACAGAAAGTTTCGATTTTGACATCAAAGAAATGAGAAAAATTCTTGATTTCCACAACTTAGAGGA TAGGGACTGGTTGTTTGGTGTTATCAAACAAGGGAGAGTGTTTAATGGGAAAGAGAGAGGTGGGAGGTTGTTTGTAAGCCCTGATTATAATCAGACAATG GAGCAGCAAAGAGAGATGACCATGAAAAGGATTGAGTATTTGTTAGAAAGAGGTGCTTTTGATGGATGGTTGACAAAAAAAGGGGTTGAAGCTGAATTGA AAAAGTTGGCTTTGCTTGAAGTTATCGAGATTTTTGATCACTCTCTTGCTATTAAGACTGGTGTTCATTTCTTCTTATGGGGTGGTGCTATCCAATTTAT GGGCACAAAACGCCACCATGACAAGTGGCTAAGAGACACTGAGACTTTTGCAATCAAAGGTTGCTTTTCTATGACTGAGTTGGGGCATGGAAGTAATGTT CGAGGAATTGAAACAGTCACAACTTATGATTCGAAGACGGGAGAGTTTGTAATCAATACCCCATGTGAATCAGCTCAGAAGTATTGGATAGGGGGGGCTG CTAATCATGCAACACACACTATAGTCTTTTCTCAGCTCAACATAAATGGGGTGAATGAAGGGGTCCACGCTCTTATAGCCCAGATCAGGGATGTAAATGG AAACATATGCCCAAACATCTGTATAGCTGATTGTGGCCATAAAATTGGTTTGAATGGTGTTGATAATGGTCGAATCTGGTTTGACAATGTGCGAATCCCC AGAGAGAACTTGTTGAATTCGGTTGCTGATGTTTCATCAGATGGTCAATATCTGAGTGCAATAAAAGACCAAGACCAAAGGTTTGCAGCATTCTTGGCCC CTTTGACATCTGGTCGTGTAACTATTGCTACTAGTGCAATTTACTCTGCAAAGATTGGTTTGGCAATTGCTATTAGGTATGCCTTGAGTAGGCGGGCATT TTCTATTACTCCTAATGGACCTGAAGTCCTTTTGCTTGATTACCCAAGTCATCAACGCCGACTCTTGCCTCTTCTTGCTAAGTCGTATGCTATGAGTTTT GGCGGAAATTACTTGAAAATGATGTACGTGAACAGAACCCCTGAATCAGCCAAAACTCTTCATGTTGTTTCAAGTGCATTCAAGGCTATCTTCACGTGGC ATAACATGAGAACCCTCCAGGAATGCCGTGAAGCTTGTGGAGGACAAGGCTTGAAGACTGAAAATCGAGTTGGTCATCTGAAAGGTGAATTTGATGTCCA GTCAACTTTCGAGGGGGACAACAATGTTCTCATGCAGCAGGTCAGCAAGGCACTCCTTTCAGAATATGTAGCTGCAAAGAAGAAAAACAAACCTTTCAAA GGTTTGGGATTAGAACACATGAATGGACCCGTCCCTGTAATTCAATCTAATCTTACAAGCACTACCCTCAGGAATAGCCAATTCCAGATGAATGCTCACT GCTTGAGGGAACGAGATCTTCTGAACCGTTTTGCTGCAGAAGTTTCACTATATCAATCAAAGGGAGAAAGCAAAGAGCGAGCATTTATTCTGAGTTATCA ACTTGCAGAAGACTTGGGCAGAGCTTTCTCAGACAGAGCTATTCTGCAGACCTTCATTGATGCTGAGGCAAATGTATCTGCTGGTTCCTTGAAGAATGTC CTGGGTTTGTTGAGATCCATGTATGCCTTAATCTGTTTGGAAGAAGACGCCGCATTCCTTCGGTATGGGTACTTATCAACAGACAACGCAGCTGCTGTGA GGAACGAAGTGACAAAGCTCTGCGGAGAATTGCGACCACATGCACTTGCACTGGTCAGTTCTCTCGGCATTCCTGATGCCTTTTTGAGCCCCATAGCATT TAACTGGATCGACGCCAATTCATGGTCTTCAGTTCAGAAATAG
AA sequence Show only first row Show all	>Potri.013G123500.1 pacid=42811953 polypeptide=Potri.013G123500.1.p locus=Potri.013G123500 ID=Potri.013G123500.1.v4.1 annot-version=v4.1 MAQESSINTASRRTRILNNHLVQSPSKPTSCLQSNSCLSYSPPELTESFDFDIKEMRKILDFHNLEDRDWLFGVIKQGRVFNGKERGGRLFVSPDYNQTM EQQREMTMKRIEYLLERGAFDGWLTKKGVEAELKKLALLEVIEIFDHSLAIKTGVHFFLWGGAIQFMGTKRHHDKWLRDTETFAIKGCFSMTELGHGSNV RGIETVTTYDSKTGEFVINTPCESAQKYWIGGAANHATHTIVFSQLNINGVNEGVHALIAQIRDVNGNICPNICIADCGHKIGLNGVDNGRIWFDNVRIP RENLLNSVADVSSDGQYLSAIKDQDQRFAAFLAPLTSGRVTIATSAIYSAKIGLAIAIRYALSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAMSF GGNYLKMMYVNRTPESAKTLHVVSSAFKAIFTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQSTFEGDNNVLMQQVSKALLSEYVAAKKKNKPFK GLGLEHMNGPVPVIQSNLTSTTLRNSQFQMNAHCLRERDLLNRFAAEVSLYQSKGESKERAFILSYQLAEDLGRAFSDRAILQTFIDAEANVSAGSLKNV LGLLRSMYALICLEEDAAFLRYGYLSTDNAAAVRNEVTKLCGELRPHALALVSSLGIPDAFLSPIAFNWIDANSWSSVQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Potri.013G123500 [exp]	0	1
AT5G33280			Voltage-gated chloride channel...		Potri.006G064000 [exp]	1.41	0.8312
AT2G26460		SMU2	SUPPRESSORS OF MEC-8 AND UNC-5...		Potri.018G064100 [exp]	4.89	0.8126
AT4G08540			DNA-directed RNA polymerase II...		Potri.002G090900 [exp]	6.32	0.7723
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Potri.006G043800 [exp]	8.36	0.7899
AT5G56260			Ribonuclease E inhibitor RraA/...		Potri.011G169700 [exp]	11.18	0.8001
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.005G018700 [exp]	12.48	0.7858	Pt-VP2.1
AT1G24440			RING/U-box superfamily protein...		Potri.008G181300 [exp]	16.91	0.7669
AT2G14520			CBS domain-containing protein ...		Potri.009G082300 [exp]	17.00	0.7760
AT4G08290			nodulin MtN21 /EamA-like trans...		Potri.005G176100 [exp]	17.14	0.7710
AT3G62860			alpha/beta-Hydrolases superfam...		Potri.014G129000 [exp]	17.29	0.7645

Compare expression of checked genes

Potri.013G123500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.