Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31060 1085 / 0 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT5G13650 427 / 2e-141 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT5G08650 134 / 7e-33 Small GTP-binding protein (.1) AT5G39900 125 / 7e-30 Small GTP-binding protein (.1) AT3G22980 100 / 8e-22 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G45332 90 / 1e-18 Translation elongation factor EFG/EF2 protein (.1) AT4G20360 89 / 1e-18 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT2G45030 90 / 2e-18 Translation elongation factor EFG/EF2 protein (.1) AT1G56070 88 / 1e-17 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT4G02930 84 / 6e-17 GTP binding Elongation factor Tu family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G053000 [exp] 423 / 1e-139 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.001G305300 [exp] 139 / 4e-34 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.017G079800 [exp] 107 / 4e-24 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.014G138100 [exp] 94 / 3e-20 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.009G152500 [exp] 96 / 4e-20 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.002G215900 [exp] 92 / 1e-19 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.001G110200 [exp] 89 / 1e-18 AT4G20360 716 / 0.0 RAB GTPase homolog E1B (.1) Potri.003G109900 [exp] 89 / 4e-18 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.001G123600 [exp] 89 / 5e-18 AT1G45332 1337 / 0.0 Translation elongation factor EFG/EF2 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002179 [exp] 1035 / 0 AT2G31060 1036 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10039896 [exp] 976 / 0 AT2G31060 976 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10007535 [exp] 428 / 3e-141 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10012200 [exp] 382 / 3e-121 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10035968 [exp] 142 / 3e-35 AT5G08650 1102 / 0.0 Small GTP-binding protein (.1) Lus10007250 [exp] 126 / 4e-30 AT5G39900 1080 / 0.0 Small GTP-binding protein (.1) Lus10015364 [exp] 124 / 2e-29 AT5G39900 1082 / 0.0 Small GTP-binding protein (.1) Lus10025694 [exp] 114 / 2e-26 AT5G08650 1009 / 0.0 Small GTP-binding protein (.1) Lus10039840 [exp] 113 / 9e-26 AT2G45030 1289 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Lus10031185 [exp] 89 / 4e-19 AT1G56070 504 / 6e-175 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0437 [poplar] [flax] EF-G_C PF00679 [poplar] [flax] EFG_C Elongation factor G C-terminus CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2
Representative CDS sequence Show only first row Show all	>Potri.013G123700.1 pacid=42811009 polypeptide=Potri.013G123700.1.p locus=Potri.013G123700 ID=Potri.013G123700.1.v4.1 annot-version=v4.1 ATGGTAGCTCCACTCCTCCGTTCTCTCTGGTCCACCACCAGAAAACCCTTTTCCCCGCGCGGCACCCTTTTCCCCCGCTTCCTCTCCACCGCCTCCGCAA CCTCTGCCACTACAGCACCAAATCCATCCTTGGATCCAAGTAGACTAAGAAACGTTGCTGTCATAGCTCATGTCGATCATGGGAAGACAACATTAATGGA TCGGTTGCTGAGGCAGTGTGGAGCTGATATACCCCATGAGAGAGCCATGGATTCTATAAGCCTTGAACGTGAGAGAGGAATCACTATAGCTTCAAAGGTT ACAGCAATTTCATGGAAGGAGAATGAGCTAAACATGGTCGATACACCGGGACATGCTGATTTTGGTGGAGAGGTTGAGCGGGTTGTTGGGATGGTTGAAG GAGCAATTTTAGTTGTAGATGCGGGTGAAGGTCCACTTGCACAGACAAAATTTGTTCTTGCTAAAGCCTTGAAGTATGGTCTACGTCCTATTCTACTTTT GAACAAAGTAGATCGACCTGCAGTTTCTGAGGAGAGGTGCAATGAAGTTGAGAGCTTAGTATTCGATCTGTTTGCAAATCTTGGAGCTACAGAGGAGCAG TTGGATTTTCCTGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCCTCCTCCTTCACCAAAGATCCTCCCGCTGATGTGAAGAATATGTCACAATTGC TTGATGCCATCATAAGACATGTTCCTCCACCAACAGCTAACCTTGATGCCCCTTTTCAGATGCTGGTTTCCATGATGGAAAAAGATTTTTATCTTGGAAG AATATTAACTGGGCGTGTTTTTTCTGGAGCTGTTCGTGTTGGAGACAGAATTCATGGACTACGGAGCACAGATTCTGGGGTTACAAAAATTGAAGAAGGA AAGGTTACAAAGCTAATGAAAAAGAAGGGTACAAGCATGGCTCTAATTGATAGCGCTGGAGCTGGTGATATAATATCCATGGCTGGGATGGCTAGTCCAG TAATAGGCCACACGGTAGCTAATGTGGAGGTTATGACTGCATTGCCAACTGTTGAGCTAGATCCTCCGACCATTTCTATGACTTTTGGTGTCAATGACTC CCCTCTTGCTGGTCGAGATGGAACCCATCTGACTGGAGGGAAAATCGGTGATCGGTTAATGGCTGAAGCAGAAACTAATCTTGCCATCAATGTGCTTCCT GCCATTGGAGAGTCATATGAGGTTCAGGGAAGAGGAGAACTTCAACTTGGGATCTTGATTGAGAATATGAGACGTGAAGGATTTGAGCTGTCCGTCTCAC CTCCTAGAGTCATGTATAAAACTGAGAATAAGGAGAAGCTTGAACCAATTGAAGAAGTGACCATTGAGATAAATGAAGAGCATGTGGGGTTAATAATGGA AGCTTTATCTCATAGACGAGCTGAGGTTCTCGATATGGGTCCTGTTCCTGGGCATGTTGGCAGGACTAGATTGTCCTTGACTTGTCCATCAAGAGGCCTG GTTGGTTACAGAAGTGTGTTCAGCAGTGACACACGTGGAACTGGATTTATGCATCGTGCTTTCCTGACCTATGCAAAACATCGGGGCCCACTTGGAAATG TTAGAAAGGGAGTATTGGTATCGATGGGTTATGGTGCTATTACAGCCTATGCATTAACGAGTCTAGAACCTCGTGGAATACTCTTTGTTAGTCCTGGGAT GGAGACATATGATGGCATGATTGTCGGCGAACATTCAAGGGATACAGATCTTGATGTCAACCCAGTTAGGGCAAAGGAACTTAGTAACATGCGTGCTGCT GGCAAGGATGAGAATGTGAAACTTTCTCCACCTCGCTTGATGACGCTTGAAGAAGCCATTGGTTATGTAGCTTCCGATGAGCTTATTGAGGTCACACCTA AGACCATCCGGTTGAGAAAAAGATACCTGGAAGTTAACAAGCGTAAAACCATGAGTAAAAGGCTGAAGGAGTGA
AA sequence Show only first row Show all	>Potri.013G123700.1 pacid=42811009 polypeptide=Potri.013G123700.1.p locus=Potri.013G123700 ID=Potri.013G123700.1.v4.1 annot-version=v4.1 MVAPLLRSLWSTTRKPFSPRGTLFPRFLSTASATSATTAPNPSLDPSRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKV TAISWKENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCNEVESLVFDLFANLGATEEQ LDFPVLYASAKEGWASSSFTKDPPADVKNMSQLLDAIIRHVPPPTANLDAPFQMLVSMMEKDFYLGRILTGRVFSGAVRVGDRIHGLRSTDSGVTKIEEG KVTKLMKKKGTSMALIDSAGAGDIISMAGMASPVIGHTVANVEVMTALPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGDRLMAEAETNLAINVLP AIGESYEVQGRGELQLGILIENMRREGFELSVSPPRVMYKTENKEKLEPIEEVTIEINEEHVGLIMEALSHRRAEVLDMGPVPGHVGRTRLSLTCPSRGL VGYRSVFSSDTRGTGFMHRAFLTYAKHRGPLGNVRKGVLVSMGYGAITAYALTSLEPRGILFVSPGMETYDGMIVGEHSRDTDLDVNPVRAKELSNMRAA GKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKTIRLRKRYLEVNKRKTMSKRLKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Potri.013G123700 [exp]	0	1
AT3G49080			Ribosomal protein S5 domain 2-...		Potri.012G144700 [exp]	1.00	0.8676
AT4G02930			GTP binding Elongation factor ...		Potri.002G215900 [exp]	6.24	0.8287	Pt-TUFA.3
AT5G23300		PYRD	pyrimidine d (.1)		Potri.005G089700 [exp]	6.48	0.8168
AT3G49890			unknown protein		Potri.001G172500 [exp]	7.48	0.8336
AT3G01800			Ribosome recycling factor (.1)		Potri.001G333700 [exp]	7.48	0.8268
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Potri.004G018000 [exp]	9.38	0.8158
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.006G039600 [exp]	11.18	0.8210
AT5G52820			WD-40 repeat family protein / ...		Potri.009G058000 [exp]	14.83	0.8022
AT5G02050			Mitochondrial glycoprotein fam...		Potri.006G090700 [exp]	15.16	0.8037	Pt-SDH4.3
AT3G13700			RNA-binding (RRM/RBD/RNP motif...		Potri.003G035000 [exp]	15.29	0.7867

Compare expression of checked genes

Potri.013G123700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.