Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06280 136 / 1e-39 AS2 LBD2 LOB domain-containing protein 2 (.1) AT3G13850 102 / 7e-26 AS2 LBD22 LOB domain-containing protein 22 (.1) AT2G30130 99 / 2e-25 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT1G16530 97 / 6e-25 AS2 ASL9, LBD3 LOB DOMAIN-CONTAINING PROTEIN 3, ASYMMETRIC LEAVES 2-like 9 (.1) AT1G31320 96 / 3e-24 AS2 LBD4 LOB domain-containing protein 4 (.1) AT3G50510 96 / 3e-24 AS2 LBD28 LOB domain-containing protein 28 (.1) AT2G30340 94 / 6e-23 AS2 LBD13 LOB domain-containing protein 13 (.1) AT3G11090 92 / 8e-23 AS2 LBD21 LOB domain-containing protein 21 (.1) AT5G66870 95 / 9e-23 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT1G07900 92 / 9e-23 AS2 LBD1 LOB domain-containing protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G092201 [exp] 246 / 3e-82 AT1G06280 139 / 5e-41 LOB domain-containing protein 2 (.1) Potri.005G097800 [exp] 104 / 5e-28 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1) Potri.003G149000 [exp] 104 / 6e-28 AT1G31320 241 / 2e-82 LOB domain-containing protein 4 (.1) Potri.007G066700 [exp] 102 / 2e-27 AT1G31320 216 / 3e-73 LOB domain-containing protein 4 (.1) Potri.001G081400 [exp] 102 / 6e-27 AT1G31320 228 / 3e-77 LOB domain-containing protein 4 (.1) Potri.014G167100 [exp] 100 / 4e-26 AT1G07900 144 / 7e-44 LOB domain-containing protein 1 (.1) Potri.006G228301 [exp] 103 / 6e-26 AT1G31320 111 / 1e-29 LOB domain-containing protein 4 (.1) Potri.001G196400 [exp] 101 / 1e-25 AT3G13850 184 / 3e-57 LOB domain-containing protein 22 (.1) Potri.008G072800 [exp] 99 / 1e-25 AT2G30130 229 / 8e-78 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007525 [exp] 105 / 4e-28 AT2G30130 204 / 1e-67 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10017431 [exp] 104 / 9e-28 AT2G30130 199 / 1e-65 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10031769 [exp] 103 / 1e-27 AT1G31320 193 / 8e-64 LOB domain-containing protein 4 (.1) Lus10040638 [exp] 102 / 1e-26 AT1G31320 244 / 1e-83 LOB domain-containing protein 4 (.1) Lus10031191 [exp] 100 / 1e-26 AT1G31320 199 / 2e-66 LOB domain-containing protein 4 (.1) Lus10005284 [exp] 103 / 2e-26 AT2G30130 99 / 1e-25 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10031285 [exp] 101 / 3e-26 AT2G30130 226 / 3e-76 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10018275 [exp] 100 / 3e-26 AT1G31320 243 / 2e-83 LOB domain-containing protein 4 (.1) Lus10031855 [exp] 100 / 6e-26 AT2G30130 220 / 4e-74 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10023434 [exp] 99 / 1e-25 AT3G26660 131 / 5e-40 LOB domain-containing protein 24 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [poplar] [flax] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Potri.013G123900.2 pacid=42811200 polypeptide=Potri.013G123900.2.p locus=Potri.013G123900 ID=Potri.013G123900.2.v4.1 annot-version=v4.1 ATGATGCAAAGAGGTAGAGACAGCAACAACCGTGTCGCGATGCATCAGGCTTGCGCATCGTGCAAGCATCAGCGAAAGAGGTGCGCGGAGGATTGCGTAT TGGCACCATATTTTCCGGCGGAGAGAATGCAGGAGTTTCAAGCTGTCCATAAGGTTTTTGGTGTTAGCAATGTCATTAAATTAGTGAAAGATGTCGATAA AGAGAGACAAAAGGAGACGGCGGACTCGTTGGTGTGGGAGGCTTCTTGCAGACAAGATGATCCCGTTTTAGGTTGTTATGGAAAGTTTAAGAAAATACAG GAAGAACTTGAGCTGTACAAAATGCAAACACCATTGCCAAACCAAAACATATTAAGGCAGCGACAAGGCGGCGCAGCGTATAACAAACAGCCTCTGCTAC TTGCATGGAATGCTACTCATGGGATAAATAATAGGGGGAACGGCATTGGAGGAGGATTGGCTAACAATAACGTGGCAAATTATTGCCATGACAATTCGAG TTTGATGGTTGATTCAGTCCCACATAGTTATCCCTGGCAGTTTGTGCGCGGCCAAGACAAATCAAACCCAGAAAGAGATGCTACCTCTCTTCTTCTTCCA ATCCAGCCTTCGCCGCCGCCGCATCCCTTTTCGGTCAATGGATTTAATCAACAACAATATTACCATCCAGGACAATTTGGTTCATTGAATGGCAGACCAA TGGACAGCACACTCTTCATGGGAGAAGAAGATGGACCATAG
AA sequence Show only first row Show all	>Potri.013G123900.2 pacid=42811200 polypeptide=Potri.013G123900.2.p locus=Potri.013G123900 ID=Potri.013G123900.2.v4.1 annot-version=v4.1 MMQRGRDSNNRVAMHQACASCKHQRKRCAEDCVLAPYFPAERMQEFQAVHKVFGVSNVIKLVKDVDKERQKETADSLVWEASCRQDDPVLGCYGKFKKIQ EELELYKMQTPLPNQNILRQRQGGAAYNKQPLLLAWNATHGINNRGNGIGGGLANNNVANYCHDNSSLMVDSVPHSYPWQFVRGQDKSNPERDATSLLLP IQPSPPPHPFSVNGFNQQQYYHPGQFGSLNGRPMDSTLFMGEEDGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06280	AS2	LBD2	LOB domain-containing protein ...		Potri.013G123900 [exp]	0	1
					Potri.006G062050 [exp]	3.00	1.0000
					Potri.012G082350 [exp]	5.29	1.0000
AT5G05800			unknown protein		Potri.008G217500 [exp]	12.40	1.0000
AT1G74875			unknown protein		Potri.013G008800 [exp]	13.96	0.9979
AT4G30230			unknown protein		Potri.018G092800 [exp]	16.15	0.9644
					Potri.014G028650 [exp]	17.54	1.0000
AT1G50060			CAP (Cysteine-rich secretory p...		Potri.009G083600 [exp]	18.54	0.9969
					Potri.012G045401 [exp]	20.39	1.0000
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.002G009900 [exp]	20.97	0.9878
					Potri.010G096850 [exp]	23.36	0.9631

Compare expression of checked genes

Potri.013G123900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.