Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14300 461 / 2e-164 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G092000 [exp] 556 / 0 AT1G14300 449 / 2e-159 ARM repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036742 [exp] 494 / 2e-177 AT1G14300 498 / 1e-178 ARM repeat superfamily protein (.1.2) Lus10037185 [exp] 455 / 1e-160 AT1G14300 464 / 3e-164 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04063 [poplar] [flax] DUF383 Domain of unknown function (DUF383) PF04064 [poplar] [flax] DUF384 Domain of unknown function (DUF384)
Representative CDS sequence Show only first row Show all	>Potri.013G124050.1 pacid=42810720 polypeptide=Potri.013G124050.1.p locus=Potri.013G124050 ID=Potri.013G124050.1.v4.1 annot-version=v4.1 ATGGCCACAGAGCTTGAAGAACTAGTGGGCTTTCTGTCTTCTCCTTCCCCGCCTGTGAAGAAGGCAGCTGTTGAAATTGTTCGAGACTTAACTGGGTCTG AAGATGGGTTACTGTCTCTTTCCAAGTATGCCAGTACTGTGCTTCCATCATTATCTCAGCTACTTAAGGAAAAAAAGGAGGTTTCTGAACCTGCAGCAGA AGCTCTTATAAATCTTTCACTCAACTCGAATTTAGCTGCAAAGATGGTTGAAATGGGAATGATTAAAACAGCAATGGATGTATTGTATAAACCAGATAGT AGCATAACTCGTTTGTTGGTGATGCTACTAGTTAACCTCACTCAATTGGATTCTGGAATTGTGTCCTTGCTTCAGATTGAGGATGAGAAAATGCAAGGAC TATTCGTTATGAAGCTGGTGAGATCATTTGGTAGATCCTCTGATGAAACGAGAGATGATCCATTTGATCATGTTGGTTCAATTCTTGTGAACATTTCAAA GAAAGAAGCTGGAAGGAAGATGTTACTAGACTCTAAGAGAGGGTTGCTGAAGCAGATTCTCCGCCAATTTGATTCAACAAGTCCATTACGGAAGAAAGGG GTCTCTGGAACACTCCGCAACTGTTGTTTTGAAGCTGAGAATCAACTTCAGAATTTTCTTTTGATATCTGAGTTTCTTTGGCCAGCTCTACTTCTTCCTG TTGCTGGTAAAAAGATATATAGTGAACAAGACACATCAAAAATGCCTCTTGAGCTTGGCAGTGCACTCTCAATTGAGCGTGAACCATGGGATGATCCTGA AATTCGTGTTGAAGCATTGGAATCTATTTACTTGATCATAGTACAGGAGGCAGGTCTAAGAGCCTTATGGTCTGTGAATGGACCACGTATATTACAAGTT GGATACGAAGATGAGGAAGATCCTAAAGTAATGGAAGCATATGAACGAGTTGGCTCGTTGCTGGTTCATGGCTGTGGGACAGAGGAACCCTCCACTGAGA CATCAAAATGA
AA sequence Show only first row Show all	>Potri.013G124050.1 pacid=42810720 polypeptide=Potri.013G124050.1.p locus=Potri.013G124050 ID=Potri.013G124050.1.v4.1 annot-version=v4.1 MATELEELVGFLSSPSPPVKKAAVEIVRDLTGSEDGLLSLSKYASTVLPSLSQLLKEKKEVSEPAAEALINLSLNSNLAAKMVEMGMIKTAMDVLYKPDS SITRLLVMLLVNLTQLDSGIVSLLQIEDEKMQGLFVMKLVRSFGRSSDETRDDPFDHVGSILVNISKKEAGRKMLLDSKRGLLKQILRQFDSTSPLRKKG VSGTLRNCCFEAENQLQNFLLISEFLWPALLLPVAGKKIYSEQDTSKMPLELGSALSIEREPWDDPEIRVEALESIYLIIVQEAGLRALWSVNGPRILQV GYEDEEDPKVMEAYERVGSLLVHGCGTEEPSTETSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14300			ARM repeat superfamily protein...		Potri.013G124050 [exp]	0	1
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.018G018800 [exp]	2.23	0.8455
AT5G27400			S-adenosyl-L-methionine-depend...		Potri.005G039000 [exp]	3.46	0.7998
AT3G05810			unknown protein		Potri.013G007600 [exp]	3.46	0.8075
AT4G35987			S-adenosyl-L-methionine-depend...		Potri.007G057000 [exp]	3.74	0.7760
AT1G06200			Peptidase S24/S26A/S26B/S26C f...		Potri.002G037900 [exp]	5.91	0.7937
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Potri.001G390400 [exp]	10.95	0.7235
AT3G13230			RNA-binding KH domain-containi...		Potri.011G166000 [exp]	14.45	0.7625
AT1G26470			unknown protein		Potri.008G095100 [exp]	15.36	0.6608
AT2G18400			ribosomal protein L6 family pr...		Potri.007G024900 [exp]	17.88	0.7631
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Potri.015G130000 [exp]	22.36	0.7993	RPS13.4

Compare expression of checked genes

Potri.013G124050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.