Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06270 360 / 2e-124 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 79 / 8e-16 PGR3 proton gradient regulation 3 (.1) AT3G48810 71 / 2e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 69 / 1e-12 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 67 / 6e-12 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 63 / 1e-10 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 61 / 3e-10 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63130 60 / 8e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08610 60 / 8e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62680 60 / 1e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046000 [exp] 74 / 3e-14 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 67 / 7e-12 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.014G105900 [exp] 65 / 2e-11 AT4G01400 576 / 0.0 unknown protein Potri.010G241300 [exp] 65 / 3e-11 AT5G04810 1230 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.005G046200 [exp] 64 / 5e-11 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 64 / 5e-11 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G075900 [exp] 64 / 5e-11 AT1G05670 89 / 2e-18 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.005G038400 [exp] 64 / 6e-11 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G150100 [exp] 64 / 7e-11 AT1G62930 442 / 8e-149 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017675 [exp] 367 / 1e-126 AT1G06270 397 / 1e-138 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033632 [exp] 352 / 7e-121 AT1G06270 392 / 8e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026545 [exp] 72 / 2e-13 AT2G17140 1002 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013832 [exp] 71 / 4e-13 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008969 [exp] 66 / 1e-11 AT5G04810 1121 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012068 [exp] 66 / 2e-11 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005303 [exp] 66 / 2e-11 AT1G30290 1037 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 64 / 6e-11 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 64 / 7e-11 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003424 [exp] 64 / 1e-10 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Potri.013G124100.1 pacid=42812442 polypeptide=Potri.013G124100.1.p locus=Potri.013G124100 ID=Potri.013G124100.1.v4.1 annot-version=v4.1 ATGACAAATCTAGCAACAAAGCTGAGCAAATCTCTTCTTCCTTACAGTAAAATCCTCCTTCAGTTTCGTACACTCTCTACCTCACATACACCACTTGAAG AAACCCTCAAAGCAGCAGTTGAATGCAAATCCTACTCAAAATTCCCTGACCTTTTCGACTCCTTTAAACAATCTAACAACATCCCAAGTCCTTTTTCTTT CCTCTCTACCTTCCCTTTTAATCTCAGGACTCAAGTCATTGATGAAATCATCCAATCTTTGATCCCCATTAGACCCCGCTTTCGAAACTCTATCGTTTAT AGCTCTCTTCTCTCATATACCCTTAAAAATTCCAATCTTTTCTCTCTTTCTCTTGCTATAATCCAATGCACTCTTCGTTCTGGGTGCTTACCTGTGCCTC AAACACATGTTTCTCTCTCTTCTGCTTGGCTTGATCGCCGGCGTGAAGGTCAGTCAGTTGGTGACATTCTAATGGAAATGAAGTCTATTGGGTATAATCC TGATTGTGGTTTGTGTAATTATATTGTGTTGTCTTTATGTAATGTTGATCAGTTGATCGAGGCAGTGAAAGTCTTGAAGGGTATGAAACAAGTGGGTTGT TTTCCTGATTGGGAAAGTTATGGGATTGTTATTGGTGCCATGTGTAGAGTTAGAAAATGTGACGATGCAATTGAGATGATGAAGGAAATGGTGGTGAGAA TGAGATTGTGTCCTAGGCAGGGAGTAGTGGTGAAAGTATTGGCAGCGTTGAGGGCGAATAGAGAGATGAGGAAAGCTGGTGAGATGATTGAGTTCCTGGA GAAGGAAGGGTACGGTGTTGGGTTTGAGAGTTATGAGTTGGTAGTTGAGGGATGTTTGGAGTGTAAAGATTTTTTTTTGGCCGCGAAAGTTGTGATGGGA ATGACAGAGAAAGGGTTTATACCTTATATCAAGGTGAGGCAAAAGGTAGTTGAGGGATTGATTGATGCTGGTGAATGGAAGCTTGCTTGTACTGTGAGAG AAAGATTTGCAGCATTAAGTTCATAG
AA sequence Show only first row Show all	>Potri.013G124100.1 pacid=42812442 polypeptide=Potri.013G124100.1.p locus=Potri.013G124100 ID=Potri.013G124100.1.v4.1 annot-version=v4.1 MTNLATKLSKSLLPYSKILLQFRTLSTSHTPLEETLKAAVECKSYSKFPDLFDSFKQSNNIPSPFSFLSTFPFNLRTQVIDEIIQSLIPIRPRFRNSIVY SSLLSYTLKNSNLFSLSLAIIQCTLRSGCLPVPQTHVSLSSAWLDRRREGQSVGDILMEMKSIGYNPDCGLCNYIVLSLCNVDQLIEAVKVLKGMKQVGC FPDWESYGIVIGAMCRVRKCDDAIEMMKEMVVRMRLCPRQGVVVKVLAALRANREMRKAGEMIEFLEKEGYGVGFESYELVVEGCLECKDFFLAAKVVMG MTEKGFIPYIKVRQKVVEGLIDAGEWKLACTVRERFAALSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06270			Pentatricopeptide repeat (PPR)...		Potri.013G124100 [exp]	0	1
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	8.00	0.8995
AT4G31200			SWAP (Suppressor-of-White-APri...		Potri.006G279800 [exp]	8.30	0.8757
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.010G035700 [exp]	12.24	0.8865
AT3G18020			Pentatricopeptide repeat (PPR)...		Potri.015G039300 [exp]	17.32	0.8749
AT5G14080			Tetratricopeptide repeat (TPR)...		Potri.001G326800 [exp]	17.54	0.8703
AT1G03540			Pentatricopeptide repeat (PPR-...		Potri.013G145000 [exp]	22.58	0.8731
AT5G46100			Pentatricopeptide repeat (PPR)...		Potri.011G057900 [exp]	23.74	0.8720
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Potri.006G024100 [exp]	24.08	0.8671
AT3G22440			FRIGIDA-like protein (.1)		Potri.018G078701 [exp]	24.91	0.8677
AT2G03880		REME1	required for efficiency of mit...		Potri.004G208000 [exp]	28.28	0.8696

Compare expression of checked genes

Potri.013G124100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.