Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58120 293 / 2e-98 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G42380 275 / 2e-91 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT1G43700 94 / 1e-21 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT1G58110 94 / 1e-21 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT1G06850 89 / 2e-20 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT4G38900 89 / 2e-19 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G40620 87 / 5e-19 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G06070 87 / 6e-19 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G21230 86 / 2e-18 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G31370 84 / 4e-18 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G091900 [exp] 446 / 9e-159 AT3G58120 285 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.001G374200 [exp] 254 / 5e-83 AT3G58120 282 / 6e-94 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.004G219100 [exp] 102 / 1e-24 AT1G58110 303 / 8e-101 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.009G074900 [exp] 98 / 3e-24 AT2G42380 87 / 3e-20 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.003G014800 [exp] 99 / 2e-23 AT1G58110 304 / 3e-101 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.005G190700 [exp] 94 / 5e-22 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.002G069500 [exp] 95 / 6e-22 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.019G130000 [exp] 94 / 1e-21 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G075000 [exp] 92 / 3e-21 AT2G42380 91 / 1e-20 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017656 [exp] 283 / 9e-95 AT2G42380 305 / 1e-103 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10033630 [exp] 271 / 4e-90 AT2G42380 294 / 7e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10039902 [exp] 173 / 1e-52 AT3G58120 181 / 8e-56 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10018899 [exp] 95 / 5e-22 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10028595 [exp] 94 / 6e-22 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10029773 [exp] 94 / 2e-21 AT1G43700 311 / 6e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10042802 [exp] 93 / 2e-21 AT1G43700 313 / 1e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10008605 [exp] 92 / 9e-21 AT2G40620 276 / 1e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10042211 [exp] 91 / 2e-20 AT2G40620 277 / 4e-91 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10009907 [exp] 90 / 3e-20 AT1G06850 270 / 2e-89 basic leucine-zipper 52 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF07716 [poplar] [flax] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.013G124400.1 pacid=42812355 polypeptide=Potri.013G124400.1.p locus=Potri.013G124400 ID=Potri.013G124400.1.v4.1 annot-version=v4.1 ATGGCACAATTACCTCCGAAAATACCAAACAATATGACACCGAGTTGGCCTGATTTCTCTCATAAGAAGTCACCTTCCATTTGTATTATGGGGACATCGC CACCCCACGATGCTAATGCGGTCATTCCTACCGTTACCGCTAACACCACCGCTACTGTCGCATCGCAAAACCCTTCGTGGGTTGATGAATTCCTCGACTT CTCGTTGACGAGACGTGGGACGCACCGGAGGTCAGTGAGTGACTCCATTGCATTCCTAGAAGAAGCACCGACAATGCTAGAGGAATGTCGTTCCACGGGT GCACCGGGATTAGGGTCACGGCATTACAGTAGCAGTGACTTTGACAGATTTGATGATGAACAGTTTATGTCCATGTTTAACGATGGTATCTCAAATGCTG TGGCAGCTCCTAATTCAAGCTCCACACCTTCTTCGCCGTCTGATCATAACAGCATTAATGACGAGAGAGAAGCTACACTGTCTGAGCAACAGCAACAGCA GAAAGTGAGGGATGAGAATGATGAAGGGCAAAATCTATCTGAATGGGAGACACCAAGTACCGTCCCAAGCGCAACCAATCCTGCTATTACTTCTAATGAA AACAAAATTGATCCCAAGAGAGTTAAGAGAATCTTGGCAAACAGACAATCTGCTCAAAGATCACGAGTGAGGAAACTGCAGTACATATCTGAGCTTGAAC GTAGTGTAACATCATTGCAAGCTGAAGTTTCTGTGTTATCACCAAGGGTTGCATATCTAGACCATCAAAGGTTGCTTCTAAATGTTGACAACAGTGCTCT TAAGCAAAGAATCGCTGCACTGTCTCAAGATAAGATTTTCAAAGATGCTCATCAAGAAGCATTGAGGAAGGAAATAGAGAGACTGAGGCAAGTTTATCAG CAACAAAACCTCAAGATGGATAAAACGAACAGCAGCATCAACCAGAACAACTGA
AA sequence Show only first row Show all	>Potri.013G124400.1 pacid=42812355 polypeptide=Potri.013G124400.1.p locus=Potri.013G124400 ID=Potri.013G124400.1.v4.1 annot-version=v4.1 MAQLPPKIPNNMTPSWPDFSHKKSPSICIMGTSPPHDANAVIPTVTANTTATVASQNPSWVDEFLDFSLTRRGTHRRSVSDSIAFLEEAPTMLEECRSTG APGLGSRHYSSSDFDRFDDEQFMSMFNDGISNAVAAPNSSSTPSSPSDHNSINDEREATLSEQQQQQKVRDENDEGQNLSEWETPSTVPSATNPAITSNE NKIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAYLDHQRLLLNVDNSALKQRIAALSQDKIFKDAHQEALRKEIERLRQVYQ QQNLKMDKTNSSINQNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Potri.013G124400 [exp]	0	1
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Potri.014G094800 [exp]	5.09	0.9213	AGP20.1
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Potri.008G044700 [exp]	5.91	0.8799
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Potri.013G119500 [exp]	6.70	0.9084
AT5G51560			Leucine-rich repeat protein ki...		Potri.015G130100 [exp]	7.41	0.9132
AT3G12110		ACT11	actin-11 (.1)		Potri.010G204300 [exp]	11.13	0.9208	ACT5,Pt-PEAC14.3
AT5G50175			unknown protein		Potri.015G083900 [exp]	12.48	0.9031
AT5G04160			Nucleotide-sugar transporter f...		Potri.006G046600 [exp]	13.56	0.9090
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.003G112700 [exp]	13.63	0.9183	Pt-SKU5.1
AT5G56540		ATAGP14, AGP14	arabinogalactan protein 14 (.1...		Potri.013G057500 [exp]	17.88	0.9065
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Potri.014G071700 [exp]	18.00	0.9127	Pt-FLA8.1

Compare expression of checked genes

Potri.013G124400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.