Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73280 513 / 0 SCPL3 serine carboxypeptidase-like 3 (.1) AT1G73300 504 / 1e-177 SCPL2 serine carboxypeptidase-like 2 (.1) AT5G36180 502 / 8e-177 SCPL1 serine carboxypeptidase-like 1 (.1) AT5G09640 503 / 1e-176 SNG2, SCPL19 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) AT1G73310 498 / 3e-175 SCPL4 serine carboxypeptidase-like 4 (.1) AT3G10450 495 / 5e-174 SCPL7 serine carboxypeptidase-like 7 (.1.2) AT1G73270 495 / 9e-174 SCPL6 serine carboxypeptidase-like 6 (.1) AT2G22920 494 / 2e-173 SCPL12 serine carboxypeptidase-like 12 (.1.2.3) AT3G12240 488 / 3e-171 SCPL15 serine carboxypeptidase-like 15 (.1) AT2G22970 486 / 2e-170 SCPL11 serine carboxypeptidase-like 11 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G291300 [exp] 484 / 2e-169 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G290900 [exp] 478 / 2e-166 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 473 / 9e-165 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G291700 [exp] 445 / 1e-153 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G312800 [exp] 427 / 7e-147 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.001G290800 [exp] 424 / 2e-146 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.014G177500 [exp] 355 / 3e-118 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.019G054300 [exp] 334 / 3e-110 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.018G103100 [exp] 201 / 7e-59 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007731 [exp] 567 / 0 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) Lus10018667 [exp] 548 / 8e-180 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1) Lus10010895 [exp] 478 / 3e-167 AT1G73280 444 / 6e-154 serine carboxypeptidase-like 3 (.1) Lus10007732 [exp] 465 / 6e-162 AT3G12203 423 / 7e-146 serine carboxypeptidase-like 17 (.1) Lus10012718 [exp] 404 / 5e-139 AT1G73300 384 / 2e-131 serine carboxypeptidase-like 2 (.1) Lus10025859 [exp] 357 / 6e-119 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10038240 [exp] 344 / 1e-113 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020206 [exp] 329 / 6e-108 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 323 / 2e-101 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026831 [exp] 305 / 1e-98 AT4G12910 596 / 0.0 serine carboxypeptidase-like 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.013G124900.2 pacid=42812507 polypeptide=Potri.013G124900.2.p locus=Potri.013G124900 ID=Potri.013G124900.2.v4.1 annot-version=v4.1 ATGGCCAGACGATGCCTTCCTTTTCTTTTGTTATTGCAGGTTTGGTTACAGCTTGCTTCAGCCCACTCCATTGTTAAGTTTCTTCCTGGGTTTCAGGGGC CCCTTCCCTTCCACCTTGAAACAGGGTATGTTGGAGTGGATGAAGCGGAGGATGTGCAGCTCTTCTACTACTTCATCAAGTCCCAGAGGAATCCTAAAGA CGACCCTCTCTTGCTTTGGCTAACTGGTGGCCCTGGCTGCTCTGCCTTCTCTGGTCTTGCTTTTGAAATCGGTCCAATAAGATTTGAGGAAAAGGAATGC AATGGGAGCTTACCTACATTGGTTTTCAATCCATACTCATGGACACAGGTCTCCAGCATAATATTCTTAGATTTGCCTGTTAGCACTGGATTCTCCTATG CAAGAACCCCACTTGCTCTTCAGAGAAGCGACTTCAAACAAGTTTCGCAAGCTGAGCAATTTCTTCGAAAGTGGCTAATGGATCACCAAGAATTCCTCTC AAATCCAGTTTACATTTCTGGTGACTCCTACTCAGGCATCATCGTTCCAGCTGTTGTTCAAAAGATTTCTAATGGGAACAATGATGGTATCAAACCACTA ATAAATCTCAAGGGATACACACTTGGGAACCCTTTTACTGATTTTACTTTTGATTTGAACTCAAGGATTCCATTTTCTCATGGAATGGGACTTATTTCTG ATGAACTCTATGAGTCACTGAAGAAAAGTTGCGGAGGACAATATCAAACGATCGACCCTAAAAATTCAGAGTGTTTGAAAAACCTAGAGGCTCGTGATAA GTGCATTTCAGAAATTGAGGAGTCGCATATTTTGTTACGCAAGTGTCCTAGTGATGCCCCACGTCCGATAGAGATGATGGGCAATAGAAGATATCTCCGT GAGAACCCCCAAGAATTCCTCCATTTCAAACCTGATCTTCCTACCATCGGATGTTGGAATTATGGATTTCTTCTTGGTTCATACTGGGCCAATGACGATA AAGTCCGCAAAGCACTCCATGTGCGAGAGGGAAGTATAGGGGAGTGGAAACGATGCAATTATAATTATACTTATGAAATTAACAGCTGCATTAAGTATCA TATAGACCTTGGCATAAAAGGTTACCGCAGATTAATCTACAGTGGCGATCATGACATGGAGGCACCATTCTTGGGAACTCAAGCATGGATAAGATCTTTA AATTACTCTATTGTAAATGACTGGCATCCATGGCACTTTCAAGGTCAAGTTGCAGGATACACGAGGACTTACTCCAGTCAATTGACATTTGCAACTGTGA GGGACGGAGGGCACACTGCTCCAGCGGACAGACCCGCAGAATGCTTCGCCATGTTTAAAAGGTGGATAAACCAAGAACCTCTGTAA
AA sequence Show only first row Show all	>Potri.013G124900.2 pacid=42812507 polypeptide=Potri.013G124900.2.p locus=Potri.013G124900 ID=Potri.013G124900.2.v4.1 annot-version=v4.1 MARRCLPFLLLLQVWLQLASAHSIVKFLPGFQGPLPFHLETGYVGVDEAEDVQLFYYFIKSQRNPKDDPLLLWLTGGPGCSAFSGLAFEIGPIRFEEKEC NGSLPTLVFNPYSWTQVSSIIFLDLPVSTGFSYARTPLALQRSDFKQVSQAEQFLRKWLMDHQEFLSNPVYISGDSYSGIIVPAVVQKISNGNNDGIKPL INLKGYTLGNPFTDFTFDLNSRIPFSHGMGLISDELYESLKKSCGGQYQTIDPKNSECLKNLEARDKCISEIEESHILLRKCPSDAPRPIEMMGNRRYLR ENPQEFLHFKPDLPTIGCWNYGFLLGSYWANDDKVRKALHVREGSIGEWKRCNYNYTYEINSCIKYHIDLGIKGYRRLIYSGDHDMEAPFLGTQAWIRSL NYSIVNDWHPWHFQGQVAGYTRTYSSQLTFATVRDGGHTAPADRPAECFAMFKRWINQEPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Potri.013G124900 [exp]	0	1
AT1G04420			NAD(P)-linked oxidoreductase s...		Potri.008G167400 [exp]	3.16	0.9674
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.004G095800 [exp]	4.89	0.9546
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.013G075400 [exp]	6.00	0.9649
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.006G004300 [exp]	8.06	0.9469
AT3G11210			SGNH hydrolase-type esterase s...		Potri.006G100300 [exp]	10.24	0.9612	CPRD49.3
AT3G26380			Melibiase family protein (.1)		Potri.010G048300 [exp]	10.58	0.9449
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Potri.010G189800 [exp]	10.72	0.9550
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Potri.001G317600 [exp]	14.14	0.9526
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Potri.018G076600 [exp]	14.69	0.9584	Pt-HCF101.1
AT5G35170			adenylate kinase family protei...		Potri.018G113400 [exp]	16.52	0.9540

Compare expression of checked genes

Potri.013G124900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.