Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATEP3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54420 421 / 1e-150 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43590 311 / 5e-107 Chitinase family protein (.1) AT2G43580 296 / 4e-101 Chitinase family protein (.1) AT2G43570 267 / 1e-89 CHI "chitinase, putative", chitinase, putative (.1) AT2G43610 249 / 1e-82 Chitinase family protein (.1) AT2G43620 243 / 4e-80 Chitinase family protein (.1) AT3G47540 209 / 2e-67 Chitinase family protein (.1.2) AT1G56680 188 / 1e-58 Chitinase family protein (.1) AT1G02360 176 / 7e-54 Chitinase family protein (.1) AT2G43600 171 / 5e-52 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093700 [exp] 485 / 9e-176 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093800 [exp] 404 / 1e-143 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 376 / 9e-133 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093900 [exp] 372 / 4e-131 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 363 / 2e-127 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 362 / 3e-127 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.009G141700 [exp] 194 / 2e-60 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.004G182000 [exp] 189 / 2e-58 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.002G186500 [exp] 182 / 2e-56 AT1G02360 413 / 2e-147 Chitinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000453 [exp] 392 / 6e-139 AT3G54420 382 / 3e-135 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035625 [exp] 261 / 6e-87 AT3G54420 266 / 7e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003587 [exp] 249 / 5e-83 AT2G43590 270 / 1e-91 Chitinase family protein (.1) Lus10003226 [exp] 251 / 2e-82 AT3G54420 269 / 2e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10032794 [exp] 247 / 3e-82 AT2G43590 265 / 6e-90 Chitinase family protein (.1) Lus10010861 [exp] 243 / 1e-80 AT2G43590 263 / 6e-89 Chitinase family protein (.1) Lus10003231 [exp] 242 / 2e-80 AT3G54420 241 / 2e-80 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10010862 [exp] 242 / 2e-80 AT2G43590 262 / 1e-88 Chitinase family protein (.1) Lus10035621 [exp] 248 / 5e-80 AT3G54420 243 / 2e-78 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10024368 [exp] 240 / 1e-79 AT2G43590 264 / 2e-89 Chitinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [poplar] [flax] Lysozyme PF00182 [poplar] [flax] Glyco_hydro_19 Chitinase class I CL0037 [poplar] [flax] PF00187 [poplar] [flax] Chitin_bind_1 Chitin recognition protein
Representative CDS sequence Show only first row Show all	>Potri.013G125000.1 pacid=42810833 polypeptide=Potri.013G125000.1.p locus=Potri.013G125000 ID=Potri.013G125000.1.v4.1 annot-version=v4.1 ATGGCATCCTCTACAAGGAAAAGCCAGTTAGTCATTGTCTTGCTAGGAATTCTAATTGCAGGATCAGCTGTGCCGAGCCATGTTGTAGCTCAAAATTGTG GCTGTGCTGCAGACGAATGTTGCAGCCGATGGGGTTACTGTGGCACCGGCAATGACTATTGCGGCACCGGGTGTCAAGAGGGTCAGTGTTTCCCGGCAGC TCCCACCAACGATGTTTCAGTGCCTGATATCGTGACCCCAGAGTTTTTCGGTGGGATCCTTGATCAAGCTGATTCAAGCTGTGCTGGGAAGAACTTCTAT TCACGAGACGCGTTCCTTGAGGCTCTCAATTCATACTCTCGGTTTGGTAGGATTGGTTCGGTTGACGATTCCAGGCGTGAGATCGCAGCTTTCTTCGCCC ATGTCACCCATGAAACTGGACATTTTTGCTACATAGAAGAGATCAATGGACCATCAAGGGACTACTGCGACGAGGGCAATACGCAATATCCATGCAATCC TGATAAAGGTTACTACGGCCGAGGACCAATCCAACTATCATGGAATTTCAATTATGGACCTGCCGGAGAAAGCATCGGTTTTGATGGATTAAACTCTCCT GAAACTGTGGCCAATGACCCTGTAATTTCATTCAAGACAGCTCTGTGGTATTGGACTAACTCTGTCCAACCTGTAATTAGCCAAGGGTTTGGGGCGACGA TTAGAGCCATTAATGGCGCCCTTGAATGTGACGGAGCAAATCCTGCTACTGTTCAAGCTCGTGTAGGGTATTATACCGATTACTGTAATCAACTGGGTGT GGCTCCTGGAGATAACCTTACTTGTTAG
AA sequence Show only first row Show all	>Potri.013G125000.1 pacid=42810833 polypeptide=Potri.013G125000.1.p locus=Potri.013G125000 ID=Potri.013G125000.1.v4.1 annot-version=v4.1 MASSTRKSQLVIVLLGILIAGSAVPSHVVAQNCGCAADECCSRWGYCGTGNDYCGTGCQEGQCFPAAPTNDVSVPDIVTPEFFGGILDQADSSCAGKNFY SRDAFLEALNSYSRFGRIGSVDDSRREIAAFFAHVTHETGHFCYIEEINGPSRDYCDEGNTQYPCNPDKGYYGRGPIQLSWNFNYGPAGESIGFDGLNSP ETVANDPVISFKTALWYWTNSVQPVISQGFGATIRAINGALECDGANPATVQARVGYYTDYCNQLGVAPGDNLTC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.013G125000 [exp]	0	1	Pt-ATEP3.1
AT5G25930			Protein kinase family protein ...		Potri.006G235800 [exp]	2.82	0.8941
AT5G25930			Protein kinase family protein ...		Potri.006G235500 [exp]	4.69	0.8915
AT2G22860		ATPSK2	phytosulfokine 2 precursor (.1...		Potri.002G116300 [exp]	6.24	0.8646
AT1G35710			Protein kinase family protein ...		Potri.002G258400 [exp]	6.92	0.8487
AT3G05650		AtRLP32	receptor like protein 32 (.1)		Potri.012G008911 [exp]	7.74	0.8539
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Potri.005G102600 [exp]	12.36	0.7846
AT4G04720		CPK21	calcium-dependent protein kina...		Potri.011G003400 [exp]	12.40	0.8486
AT2G27430			ARM repeat superfamily protein...		Potri.004G055500 [exp]	12.84	0.8370
AT1G07900	AS2	LBD1	LOB domain-containing protein ...		Potri.014G167100 [exp]	14.38	0.8392
AT2G41180		SIB2	sigma factor binding protein 2...		Potri.019G013300 [exp]	15.74	0.8608

Compare expression of checked genes

Potri.013G125000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.