Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CYP82.15
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25180 521 / 0 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT4G31940 489 / 2e-169 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 482 / 1e-166 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 434 / 3e-148 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT2G25160 375 / 9e-125 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT5G07990 313 / 7e-101 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37360 294 / 7e-94 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37370 293 / 2e-93 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37320 291 / 2e-92 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37310 290 / 3e-92 CYP81H1 "cytochrome P450, family 81, subfamily H, polypeptide 1", cytochrome P450, family 81, subfamily H, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G106600 [exp] 849 / 0 AT3G25180 514 / 1e-179 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.014G037500 [exp] 540 / 0 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 534 / 0 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.001G334700 [exp] 513 / 6e-179 AT4G31970 459 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.009G108600 [exp] 490 / 1e-170 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038100 [exp] 487 / 2e-168 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038000 [exp] 484 / 2e-167 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038200 [exp] 482 / 1e-166 AT4G31940 501 / 7e-174 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037400 [exp] 470 / 5e-162 AT4G31940 476 / 4e-164 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038203 [exp] 591 / 0 AT3G25180 495 / 9e-172 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Lus10007837 [exp] 478 / 2e-165 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 471 / 2e-162 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 467 / 9e-161 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032745 [exp] 464 / 1e-159 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032743 [exp] 441 / 1e-150 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011657 [exp] 448 / 2e-148 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10035635 [exp] 430 / 2e-146 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10022762 [exp] 420 / 2e-142 AT4G31940 456 / 4e-156 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011658 [exp] 418 / 7e-142 AT4G31940 510 / 9e-178 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.013G125300.1 pacid=42812104 polypeptide=Potri.013G125300.1.p locus=Potri.013G125300 ID=Potri.013G125300.1.v4.1 annot-version=v4.1 ATGATTCTTGGGGCTCTCGTTTTGCTAATTCTTTATGGCTTCTGGAAAACTTTAGCCAGAGAGAGAGAAAGCAAGAAACTAGCCAGAGCCCCTGAACCAT CCGGGGCATGGCCCGTGATTGGCCACCTGCCTCGCCTAAGAGGCCAGGACCCAGCATGTAAAACCCTTGCAGCCATTGCCGATAAATATGGCCCTATTTA CTCACTCAGGCTCGGTTCTCATCGGATAGTGGTGGTGAGCAGTTGGGAAACAGTAAAGGATTGCTTGACTACCAATGACAGAATCTTGGCTACTAGAGCA AACATAGCAGCAGGAAAACATATGGGTTACAACAACGCAGCTTTTGCGTTGTCCCCATATGGAAAGTACTGGCGGGATGTTAGAAAGCTGGTCACTCTTC AGCTTCTATCAAACCACCGGCTTGAAATGCTTAAGCATGTCCGAGTATTAGAAGTAGACGCATTCATCAAAGGTTTGCACAATTCTTATGCAGAAACAGC GGAGTACCCTGCGAAGGTGACTATGAGCAAATTGTTTGAGAGCTTGACGTTCAACATAAGCCTTAGAACGATAGTTGGAAAACGATATTGCAGCAGCTTA TACGACAAAGAAAACAGCGAGCCATGGCGTTACAAAAAAGCCATAGAAAAAGCCTTGTATCTGAGTGGGATTTTTGTAATGTCTGATGCGATTCCATGGC TCGAATGGATTGATTTTCAGGGACATATAAGTGCTATGAAGAGGACTGCCAGGGAACTTGATGCGGTGATAGGAAGCTGGCTGGAGGAACATCTTAAGAA AGAAATACAAGGGGAAAGCGACTTCATGGACGTGATAATATCTAACCTTGCTGACGGTGCTGCTGAGATGTCTGGCTACTCTCGTGATGTTGTCATCAAG GCAACAACTTTGATTCTGACCCTCACAGGAGCAGGAAGCACAGCGGTTACATTAACTTGGGCACTGTCCCTATTGCTAAACCACCCAAGTGTGCTAAAGG CTGCTCAAGAAGAGCTGGACAAGCAGGTGGGAAGAGAGAAATGGGTGGAGGAATCAGATATTCAGAACCTCATGTACCTCCAAGCAATAGTGAAAGAAAC TCTGCGATTATACCCTCCAGGTCCCTTAACAGGAATACGTGAGGCCATGGAAGATTGTCATATTTGTGGCTATTATGTTCCTAAGGGCACTCGATTAGTA GTGAACATATGGAAGTTGCATCGAGACCCTCGTGTGTGGAAAAACCCAGATGACTTTCAACCTGAAAGATTCCTGACTACTCATGCTGATCTTGATTTTA GGGGTCAAGATTTCGAGTTCATTCCTTTTAGCTCAGGGAGAAGATCTTGCCCTGCTATTAATCTTGGCATGGCGGTTGTTCATCTGACCCTTGCTAGGCT ACTTCAAGGGTTTGATTTAACAACTGTTGCAGGGTTGCCCGTGGACATGAACGAAGGCCCTGGCATTGCCCTACCTAAGCTGATACCACTTGAAGCTGTC ATCAAACCACGTCTTGGATTACCCCTGTATAATTAA
AA sequence Show only first row Show all	>Potri.013G125300.1 pacid=42812104 polypeptide=Potri.013G125300.1.p locus=Potri.013G125300 ID=Potri.013G125300.1.v4.1 annot-version=v4.1 MILGALVLLILYGFWKTLARERESKKLARAPEPSGAWPVIGHLPRLRGQDPACKTLAAIADKYGPIYSLRLGSHRIVVVSSWETVKDCLTTNDRILATRA NIAAGKHMGYNNAAFALSPYGKYWRDVRKLVTLQLLSNHRLEMLKHVRVLEVDAFIKGLHNSYAETAEYPAKVTMSKLFESLTFNISLRTIVGKRYCSSL YDKENSEPWRYKKAIEKALYLSGIFVMSDAIPWLEWIDFQGHISAMKRTARELDAVIGSWLEEHLKKEIQGESDFMDVIISNLADGAAEMSGYSRDVVIK ATTLILTLTGAGSTAVTLTWALSLLLNHPSVLKAAQEELDKQVGREKWVEESDIQNLMYLQAIVKETLRLYPPGPLTGIREAMEDCHICGYYVPKGTRLV VNIWKLHRDPRVWKNPDDFQPERFLTTHADLDFRGQDFEFIPFSSGRRSCPAINLGMAVVHLTLARLLQGFDLTTVAGLPVDMNEGPGIALPKLIPLEAV IKPRLGLPLYN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Potri.013G125300 [exp]	0	1	Pt-CYP82.15
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Potri.013G157400 [exp]	1.00	0.9995
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.015G032100 [exp]	3.46	0.9884	TPS1.4
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.010G133700 [exp]	8.36	0.9933
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.005G106100 [exp]	9.69	0.9850	Pt-CTS2.5
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.006G277300 [exp]	15.58	0.9916
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125801 [exp]	18.24	0.9637
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G151900 [exp]	18.33	0.9897
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G152300 [exp]	20.37	0.9886
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Potri.014G155300 [exp]	24.39	0.9879
					Potri.001G203700 [exp]	25.76	0.9275

Compare expression of checked genes

Potri.013G125300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.