Plant FIBer expression Database

Potri.013G125700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52050 510 / 1e-180 5'-3' exonuclease family protein (.1.2.3.4.5)
AT1G34380 79 / 7e-16 5'-3' exonuclease family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G114400
[exp]
73 / 7e-14 AT1G34380 423 / 2e-148 5'-3' exonuclease family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025723
[exp]
316 / 2e-107 AT3G52050 307 / 2e-104 5'-3' exonuclease family protein (.1.2.3.4.5)
Lus10035938
[exp]
124 / 2e-34 AT3G52050 120 / 4e-34 5'-3' exonuclease family protein (.1.2.3.4.5)
Lus10006622
[exp]
84 / 2e-17 AT1G34380 409 / 2e-142 5'-3' exonuclease family protein (.1.2)
Lus10039380
[exp]
77 / 5e-15 AT1G34380 402 / 1e-139 5'-3' exonuclease family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0464 5_3_exonuc_C PF01367 5_3_exonuc 5'-3' exonuclease, C-terminal SAM fold
CL0280 PIN PF02739 5_3_exonuc_N 5'-3' exonuclease, N-terminal resolvase-like domain
Representative CDS sequence
>Potri.013G125700.1 pacid=42811436 polypeptide=Potri.013G125700.1.p locus=Potri.013G125700 ID=Potri.013G125700.1.v4.1 annot-version=v4.1
ATGGCTTACTACTACAAGTCATTGAATCTCCACCACATGTGGAAAGGAGGGTTTCACTGTGTGGGAGGAAATTTTGCAGGAGCGAGTCGGATTGTTGGCT
TTAATAACCTTTCCAATTTTAAGAGAAAGGTTTTTCTGTCTCGTCCTTCATCAGCTGTTCTATCAAACAAGGGCTACTGTAGTTTATCTCAAGTTGTTTC
TGCAATTCCTCAAAGTAATGTACTAACCTCTTCCAAAAGTGAAAACGAGGTGGTCCACCAAGATTTGGTCAAGCGTGAAGAAAATGCCGCGGAGGCTATT
AATCCTTCAAATGGAAGAGTAATGCTTATAGATGGTACATCGGTCATTTATAGAGCTTACTTCAAGCTTTTAGCAAAGGTGCATCATGGTCATCTAACAC
ATGCAGATGGCAATGGAGATTGGGTTTTAACTATATTTTCTGCGCTATCTTTTATAATTGATGTCCTGGGATTCATGCCTTCCCATGCAGTGGTGGTGTT
TGATCATGATGGAGTACCGTATGGAAAATCTAGTGTTTCACCCAACAAAACTGTCATGGAAAAAGGCTTGAATTTTCGCCACACTTTATATTCTTTATAC
AAGAGCAACCGCCCTCCTACGCCTGATACTGTCATCCAGGGACTTCCATATTTGAAAGCTGCTATCAAAGCTATGTCCGTTAAGGTGATTGAGGTACCTG
GGGTAGAAGCAGATGATGTCATTGGAACATTGGCTGTAAATAGTGTCAAGGATGGGTTTAAGGTACGAGTTGTTTCCCCGGACAAAGACTTTTTTCAGAT
TCTTTCTCCTTCATTACGTCTTCTACGGATTGCACCACGTGGCCTTGAGATGGTTTCATTTGGAATGGAGGATTTTGCTGAAAAATATGGAGGATTGAAA
CCTTCTCAGTTTGTTGATGTAATGGCTCTTATGGGTGACAAATCTGATAATATTCCAGGAGTTGAAGGAATTGGAGTTGTCCATGCTGTGGAACTGATCT
CTAGATTCGGCACATTGGAGAATTTGTTGAAATGTGTTGATCAAGTAGAAGGGGAGAGCATTAGAAAGGCCTTGAGACAGAATGCTAATCAGGCAGTACT
AAGCAAGGAGCTGGCAAAGTTGCGTTGTGAGCTTCCAGAGTACATGGTTCCATTTGCTACCACAGATTTGATTTTTAAGAAACCTGAGGACAATGGTGAG
AAATTTACAAACCTCTTGACTGCCGTCAGCTCTTATGCTGAAGGCTTTTCAGCTGACATGATCATCAGAAGAGCTTCCAAGTTGTGGGAAAAGCTTGAAG
CAAGGTGA
AA sequence
>Potri.013G125700.1 pacid=42811436 polypeptide=Potri.013G125700.1.p locus=Potri.013G125700 ID=Potri.013G125700.1.v4.1 annot-version=v4.1
MAYYYKSLNLHHMWKGGFHCVGGNFAGASRIVGFNNLSNFKRKVFLSRPSSAVLSNKGYCSLSQVVSAIPQSNVLTSSKSENEVVHQDLVKREENAAEAI
NPSNGRVMLIDGTSVIYRAYFKLLAKVHHGHLTHADGNGDWVLTIFSALSFIIDVLGFMPSHAVVVFDHDGVPYGKSSVSPNKTVMEKGLNFRHTLYSLY
KSNRPPTPDTVIQGLPYLKAAIKAMSVKVIEVPGVEADDVIGTLAVNSVKDGFKVRVVSPDKDFFQILSPSLRLLRIAPRGLEMVSFGMEDFAEKYGGLK
PSQFVDVMALMGDKSDNIPGVEGIGVVHAVELISRFGTLENLLKCVDQVEGESIRKALRQNANQAVLSKELAKLRCELPEYMVPFATTDLIFKKPEDNGE
KFTNLLTAVSSYAEGFSADMIIRRASKLWEKLEAR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G52050 5'-3' exonuclease family prote... Potri.013G125700
[exp]
0 1
AT5G57030 LUT2 LUTEIN DEFICIENT 2, Lycopene b... Potri.006G147300
[exp]
2.23 0.9711
AT2G33180 unknown protein Potri.001G053700
[exp]
4.24 0.9686
AT1G64355 unknown protein Potri.003G138500
[exp]
4.79 0.9515
AT1G24610 Rubisco methyltransferase fami... Potri.008G134200
[exp]
5.65 0.9549
AT1G03630 PORC ,POR C protochlorophyllide oxidoreduc... Potri.013G135500
[exp]
6.00 0.9710 Pt-POR.2
AT1G14030 Rubisco methyltransferase fami... Potri.008G090500
[exp]
10.67 0.9627 RBCMT.1
AT4G17740 Peptidase S41 family protein (... Potri.008G173900
[exp]
10.95 0.9578
AT5G55280 ATFTSZ1-1, CPFT... CHLOROPLAST FTSZ, ARABIDOPSIS ... Potri.001G359500
[exp]
11.48 0.9447 Pt-FTSZ.1
AT4G29060 EMB2726 embryo defective 2726, elongat... Potri.018G083900
[exp]
13.56 0.9640
AT5G52440 HCF106 HIGH CHLOROPHYLL FLUORESCENCE ... Potri.012G144300
[exp]
13.74 0.9614 Pt-HCF106.2

Potri.013G125700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.