Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43650 401 / 4e-131 EMB2777 EMBRYO DEFECTIVE 2777, Sas10/U3 ribonucleoprotein (Utp) family protein (.1) AT3G28230 94 / 4e-22 unknown protein AT1G07840 67 / 5e-12 Sas10/Utp3/C1D family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G152200 [exp] 72 / 3e-13 AT1G07840 298 / 9e-101 Sas10/Utp3/C1D family (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012061 [exp] 374 / 7e-121 AT2G43650 400 / 2e-131 EMBRYO DEFECTIVE 2777, Sas10/U3 ribonucleoprotein (Utp) family protein (.1) Lus10027922 [exp] 355 / 1e-112 AT2G43650 385 / 1e-124 EMBRYO DEFECTIVE 2777, Sas10/U3 ribonucleoprotein (Utp) family protein (.1) Lus10029397 [exp] 63 / 3e-10 AT1G07840 248 / 7e-81 Sas10/Utp3/C1D family (.1.2.3) Lus10004194 [exp] 63 / 6e-10 AT5G06350 432 / 3e-136 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04000 [poplar] [flax] Sas10_Utp3 Sas10/Utp3/C1D family PF09368 [poplar] [flax] Sas10 Sas10 C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.013G125800.1 pacid=42811086 polypeptide=Potri.013G125800.1.p locus=Potri.013G125800 ID=Potri.013G125800.1.v4.1 annot-version=v4.1 ATGGCAAAGAAAGGAAGGAGTCAAAAGAAAGACGGTAGCAGCAGAAGCAGTAAGAGAAAAACCCGTGGTGAATATGTTGACCCACAAGACATGGATGATG ATATTGATTCCTTTCACAAACAGAGGGATATTATTCCGTTTGATGTAGATGGTGATGTTGGGGAATTAAGTGACGACGGGGAAGAACCTATTTTTGATGA TGAGGCTATTAACAATGATGAGGATGAAGACAATGACGACTCCCAAGATACTGGATTGGCTGCAAAAATTATAAAGCAGCAAAAGTTCTTAAGAGCAAAG TTTGGAGATTTTGATGATGAATTGCAAGATGAAGAAGAAGATGAGGAAGGAGCACAAAATATTTTATGGAGTGGGAACAGGAGCCATGATTATCATGGTG GTGATAATCGTGATATCGAGTTAGATTCAAGTGATGAGGCCCTAAAGGAAGAGGAGGATGAGGTATTGAAATTACAGAGAGAAAGAGCAAAAAATTTATC AGTGGAAGACTTTGGCCTTAAAGATGATGAAGATGAAAGTGACAAGGAGCTAACACTAGGGGAAATCTCAAATCAAGGAAAAACCGCAAAGAAAGCTCGT TTGAGCAAAGAGGCCATTGATGACTTGGGTACAACTTTTGAGCTAAACAAAGATTTGAATGAGCTGTCAAGGAAGGAGCAAATGGAAATTATCTCTAGTT CTGCTCCAGAATTGGTTGGTTTGCTGTCTGAGCTCAATAGCACACTTGAAGAGCTTGAAAACAAAGTTAATCCACTTTTAAAGAAGGTTAAAGTGGGAGG AATCGTGCTGGAAAGTGGATTGCGCTATCTGGAGGTGAAGCAGCTTCTATTGCTGTCATATTGCCAAACTATTACATTCTATCTTCTTCTGAAGTCTGAA GGGCAGCCAGTTCTTGATCACCCTGTTATAGCTCGTCTTGTAGAGATCAGGGGCTTATTGGACAAGATGAAGCAACTCGACGAGAATCTACCATCAGAAC TCGATGAGTTTCTGAAGAAAAACCCAGGGATGCAGACAATTGAAAGCTTAGATAGAGAAGGTGATGGACCTGCTTTGGCATCTCAGTCTGTCACGAGGGA CCATGGATTGTCTCTTCTCTCAGCTGATACACAAGAACCAGCAGAGCTTTGTGATGCAATTGAGCTGCTGAAAACAGAGTCTTTAACAGGTAGCAATAGC AAAGAAGGGAAACACAAGCGTAAGAATGATGAAGTTGGTGTACAAAGTATGGAAATGTTGAAAGTAAGAGCTGCCCTGGAGGAAAAATTGAAGCAGAAGG GAGCCTTTAGTTCCTTTTCTTCAAAGCCTGATAAAGCTCAGAAGCATCGAAGACCAGTCAATGAACGGCTTGAAAGCCATGAAGACTATGATGACGATGC CGTAGATGATGAGAAGGGCAATCATAGATTGAGTAATGAGCATACAAGCATGTTGGGATCAAAGAAACTTTCCAAACTTGTTGTTTCCAAACAGAATAAG CCAAAGGTTGTTTCTGGTGATGATGATTTGCCTATGAGAGATGATATTGGAGAGAGGAGGAGGAAGCACGAGCTTAGAGTGTTGGCAGATGCTGGAGTTA AGACCGAGGATGATGCTGGACTTGGGACCGAGGATGATGCTGGAATTATGTCTGAGGATGAACTTGCAATTGAGTCTGACAAAAATGATGATATGGATGA AGATGCTGAATCCTCAGAAGATGATTTGTACGAACAAGTGAAGCAAAAACGAGCAGCCAAACTCGCTGCCAAAGCTGAGATTTACACAAGGACCTCAGCA CCCCCATCCATGCCTGAAACTGTTGATGGAAAACGTCATATCACTTATCAGATTGAGAAGAACAGAGGGCTAACACGTCCGCGCAACAAGTTGACAAAAA ATCCAAGGAAGAAATACAGGACAAAGCATGATAAAGCACAGAAGCGGCGACTAGGGCAAGTGCGCCAGATCAAGAAACCTTCTGGTCCTTATGGTGGTGA AAGCTCTGGAATCAACGCAAGAATTAGTCGAAGCATCAGACTCTGA
AA sequence Show only first row Show all	>Potri.013G125800.1 pacid=42811086 polypeptide=Potri.013G125800.1.p locus=Potri.013G125800 ID=Potri.013G125800.1.v4.1 annot-version=v4.1 MAKKGRSQKKDGSSRSSKRKTRGEYVDPQDMDDDIDSFHKQRDIIPFDVDGDVGELSDDGEEPIFDDEAINNDEDEDNDDSQDTGLAAKIIKQQKFLRAK FGDFDDELQDEEEDEEGAQNILWSGNRSHDYHGGDNRDIELDSSDEALKEEEDEVLKLQRERAKNLSVEDFGLKDDEDESDKELTLGEISNQGKTAKKAR LSKEAIDDLGTTFELNKDLNELSRKEQMEIISSSAPELVGLLSELNSTLEELENKVNPLLKKVKVGGIVLESGLRYLEVKQLLLLSYCQTITFYLLLKSE GQPVLDHPVIARLVEIRGLLDKMKQLDENLPSELDEFLKKNPGMQTIESLDREGDGPALASQSVTRDHGLSLLSADTQEPAELCDAIELLKTESLTGSNS KEGKHKRKNDEVGVQSMEMLKVRAALEEKLKQKGAFSSFSSKPDKAQKHRRPVNERLESHEDYDDDAVDDEKGNHRLSNEHTSMLGSKKLSKLVVSKQNK PKVVSGDDDLPMRDDIGERRRKHELRVLADAGVKTEDDAGLGTEDDAGIMSEDELAIESDKNDDMDEDAESSEDDLYEQVKQKRAAKLAAKAEIYTRTSA PPSMPETVDGKRHITYQIEKNRGLTRPRNKLTKNPRKKYRTKHDKAQKRRLGQVRQIKKPSGPYGGESSGINARISRSIRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Potri.013G125800 [exp]	0	1
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.013G079600 [exp]	1.00	0.9349
AT4G31520			SDA1 family protein (.1)		Potri.008G182900 [exp]	3.16	0.9117
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Potri.008G043400 [exp]	3.46	0.9091
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Potri.001G030750 [exp]	4.24	0.9026
AT2G18220			Noc2p family (.1)		Potri.001G012800 [exp]	4.47	0.9083
AT1G79150			binding (.1)		Potri.005G096900 [exp]	5.29	0.8968
AT5G57120			unknown protein		Potri.006G073100 [exp]	5.47	0.9034
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Potri.006G055300 [exp]	6.32	0.8956
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Potri.004G228700 [exp]	7.93	0.8945
AT5G54910			DEA(D/H)-box RNA helicase fami...		Potri.001G423300 [exp]	8.36	0.8859

Compare expression of checked genes

Potri.013G125800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.