Plant FIBer expression Database

Potri.013G126000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.013G126000.1 pacid=42812334 polypeptide=Potri.013G126000.1.p locus=Potri.013G126000 ID=Potri.013G126000.1.v4.1 annot-version=v4.1
ATGGCAACGAAAATCAACCATCAGATTTCACCAAATTCAGGTCCAACAGAATTGCAATTGAAGTCTATCTTGATAATTACTTTCACAACTGGTATGTTTC
TCAACTTACTCCCTCAAGAAAACATAGATGGGAATCCAGTTCCTACTGTGATCTTTAAAGGTCACCCTTCAATATTCCATGCCTTTGTGATTTCTGTCGT
CTTTGCTTTCACGGGTTCCTTTTGTTCTCTGATGATTGATAAGAAGCCTAAGGTTAGCAGGTTTTTTGCTTATTTATCAGTGATTTCCATGGCTTCGGTC
TTTTCTACTGTTGTTTTTCCCTTGTTTTTAGATAGTTTCAAGTGGGGTTTTCAGGGGAAGAAGCAGGTCATGGTTGAATAA
AA sequence
>Potri.013G126000.1 pacid=42812334 polypeptide=Potri.013G126000.1.p locus=Potri.013G126000 ID=Potri.013G126000.1.v4.1 annot-version=v4.1
MATKINHQISPNSGPTELQLKSILIITFTTGMFLNLLPQENIDGNPVPTVIFKGHPSIFHAFVISVVFAFTGSFCSLMIDKKPKVSRFFAYLSVISMASV
FSTVVFPLFLDSFKWGFQGKKQVMVE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.013G126000
[exp]
0 1
AT1G19310 RING/U-box superfamily protein... Potri.014G040400
[exp]
2.44 0.7104
AT1G26665 Mediator complex, subunit Med1... Potri.001G083801
[exp]
3.46 0.6949
AT3G10920 MSD1, MEE33, AT... MATERNAL EFFECT EMBRYO ARREST ... Potri.013G092600
[exp]
6.00 0.7023
AT2G39805 Integral membrane Yip1 family ... Potri.010G198300
[exp]
11.22 0.6888
AT1G31340 NEDD8, ATRUB1, ... ARABIDOPSIS THALIANA RELATED T... Potri.005G096700
[exp]
13.85 0.7044 Pt-UBQ7.2
AT2G04900 unknown protein Potri.014G164500
[exp]
14.42 0.7058
AT5G19630 alpha/beta-Hydrolases superfam... Potri.001G013700
[exp]
14.83 0.6278
AT3G08890 Protein of unknown function, D... Potri.016G125300
[exp]
16.73 0.6328
AT3G48890 MSBP2, ATMP2, A... MEMBRANE STEROID BINDING PROTE... Potri.015G139800
[exp]
18.89 0.6301 MP2.3
AT3G52560 MMZ4 ,UEV1D ,UE... MMS2 ZWEI HOMOLOGUE 4, ubiquit... Potri.006G205700
[exp]
19.33 0.6535

Potri.013G126000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.