Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73180 703 / 0 Eukaryotic translation initiation factor eIF2A family protein (.1.2) AT5G27640 97 / 5e-21 ATTIF3B1, ATEIF3B-1, EIF3B-1, TIF3B1 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) AT5G25780 91 / 4e-19 ATEIF3B-2, EIF3B-2 eukaryotic translation initiation factor 3B-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G015200 [exp] 99 / 1e-21 AT5G27640 1168 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Potri.006G267500 [exp] 97 / 4e-21 AT5G27640 1087 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004803 [exp] 623 / 0 AT1G73180 623 / 0.0 Eukaryotic translation initiation factor eIF2A family protein (.1.2) Lus10026904 [exp] 85 / 5e-17 AT5G27640 1167 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Lus10016562 [exp] 77 / 1e-14 AT5G27640 1072 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Lus10020098 [exp] 74 / 9e-14 AT5G27640 1108 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF08662 [poplar] [flax] eIF2A Eukaryotic translation initiation factor eIF2A
Representative CDS sequence Show only first row Show all	>Potri.013G126300.1 pacid=42812521 polypeptide=Potri.013G126300.1.p locus=Potri.013G126300 ID=Potri.013G126300.1.v4.1 annot-version=v4.1 ATGGCAGCTAAGGACACTGCACCTTCCTTGGATATTTTAGTTAGAGGACCAGAAGGGTGTTTTGTGTGGAATGGGCCACCATTTGGGAATGGTGAACCAA GTGTTAAGCTTGAGAGAGTTCCTTGTAGTCGTGCAAAGTTTAGTGAAGATGGGTCTAGACTTCTGGTGATGAAAAGTGATTTTGTTATTAGTATCTATGA TTGCAGTAGCTTTAAGGAGATTAAATCTTTCCAAGTTCCCAATGTTCTCGCTGCTGTGTTGTCACCTTGTGGGACTTATCTTCAGACTTTTCAGAAATCA TCGACACCACAGGATAAGAATCTGGTTTTGTGGAAGATAGAGAGTGGTGATTCTGTTTATCAGCAATTCCAAAAGAACATGACAAAGACCACGTGGCCCT CGATCCGATTAAGTTCTGATGAAGCTATTGCATGTCGGATGGCAACAAATGAAATACAATTTTTCGATCCCAAAGATTTCTCTAAAGGAATTGTTCACCG CATAAGGGTTCCTGGGGTGGCTGCTGTTGAGCTTTCAATGGTGCCAGGGTCTCATGTGGCAGCATTTATCCCAGAGTCTAAGGGTGTTCCAGCCAGTGTT CAGATATTTGCTTGTGGGAAAGAAATGCAAAGTCAGCCTGTTGCTCGAAGGAGCTTTTTCCGATGTGATACAGTGCAACTGAAATGGAATCGTGGTTCTA CTGGGCTTCTGGCGGTGGCTCAATCAGATGTTGACAAGACCAATCAAAGTTATTATGGAGAGTCCAAGCTGAACTACCTTACAACCAATGGGTCCCATGA GGGGCTGGTACCTCTACGTAAAGAAGGGCCAATTCACGATGTTCAGTGGTCATGTTCTGGTTCAGAGTTTGCTGTTGTTTATGGATTTATGCCTGCAAGC GCAACATTGTTTGATAAGAAGTGCCATCCTCTACTTGAGCTTGGAACGGGCCCTTACAATACTGTCCGTTGGAACCCAAAAGGGAAATTTCTATGCTTAG CTGGTTTTGGTAACTTACCTGGTGACATGGCTTTCTGGGACTATGTGGACAAAAAACAAATTGGAACAACCAAGGCTGAATGGTCTGTAACAAGTGAGTG GTCCCCAGATGGGTGCTATTTCATGACTGCCACAACAGCTCCAAGACTACAAGTTGACAATGGGATTAAAATTTTCCACCACAATGGATCACTATACTTC AAAAAGATGTTTGATAAATTGTATGAGGTTGAGTGGAAACCAGAATCACCAGATAGATTTGGTGAAATTGCAGAACTAATCAAGTCTGTTGATTCATTAA AAGTCACAGAAACCAAATCTCAAGGACAAGGTGCAGCTTCCAAGAAAACTGCTCCTGCTCAGAAACCTGCTGCTTATCGCCCTCCACAAGCTAAAGCTGC TGCTGCTGTTCAGGCAGAGTTGTTTGGAGGAAGCTCCACTGAACAAATGAGCAAGAATGCGCTGAAGAACAAGAAAAAAAGAGAGAAACAAAGGGAGAAG AAGGCCGCTGAGGCTGGCACAACTGCTGAGGGTTCATGGTAG
AA sequence Show only first row Show all	>Potri.013G126300.1 pacid=42812521 polypeptide=Potri.013G126300.1.p locus=Potri.013G126300 ID=Potri.013G126300.1.v4.1 annot-version=v4.1 MAAKDTAPSLDILVRGPEGCFVWNGPPFGNGEPSVKLERVPCSRAKFSEDGSRLLVMKSDFVISIYDCSSFKEIKSFQVPNVLAAVLSPCGTYLQTFQKS STPQDKNLVLWKIESGDSVYQQFQKNMTKTTWPSIRLSSDEAIACRMATNEIQFFDPKDFSKGIVHRIRVPGVAAVELSMVPGSHVAAFIPESKGVPASV QIFACGKEMQSQPVARRSFFRCDTVQLKWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTNGSHEGLVPLRKEGPIHDVQWSCSGSEFAVVYGFMPAS ATLFDKKCHPLLELGTGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDKKQIGTTKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHHNGSLYF KKMFDKLYEVEWKPESPDRFGEIAELIKSVDSLKVTETKSQGQGAASKKTAPAQKPAAYRPPQAKAAAAVQAELFGGSSTEQMSKNALKNKKKREKQREK KAAEAGTTAEGSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73180			Eukaryotic translation initiat...		Potri.013G126300 [exp]	0	1
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.002G123000 [exp]	4.35	0.7534	Pt-CYCD1.3
AT5G07950			unknown protein		Potri.018G051500 [exp]	4.89	0.7416
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.008G043000 [exp]	7.74	0.7264
AT3G14120			unknown protein		Potri.001G165900 [exp]	10.00	0.7287
AT5G50990			Tetratricopeptide repeat (TPR)...		Potri.012G109300 [exp]	14.49	0.7131
AT3G58610			ketol-acid reductoisomerase (....		Potri.004G043700 [exp]	19.44	0.7176	Pt-PGAAIR.3
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Potri.005G228200 [exp]	25.80	0.6488
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Potri.015G073700 [exp]	26.15	0.6749	RDR904
AT4G28020			unknown protein		Potri.018G096900 [exp]	27.87	0.7313
AT2G41620			Nucleoporin interacting compon...		Potri.012G034800 [exp]	32.15	0.6902

Compare expression of checked genes

Potri.013G126300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.