Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02960 159 / 1e-47 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT3G47550 152 / 7e-45 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 152 / 1e-44 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 150 / 1e-44 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G01275 117 / 1e-31 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 115 / 3e-31 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G02610 90 / 1e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 89 / 3e-21 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G32670 54 / 5e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G03180 52 / 1e-07 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G111700 [exp] 448 / 9e-162 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.010G169200 [exp] 175 / 5e-54 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.008G086300 [exp] 172 / 6e-53 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.004G093500 [exp] 142 / 5e-41 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G115600 [exp] 133 / 6e-38 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.017G122300 [exp] 126 / 3e-35 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G127400 [exp] 119 / 3e-32 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.014G121900 [exp] 94 / 5e-23 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G196600 [exp] 90 / 1e-21 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012826 [exp] 169 / 3e-51 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10036754 [exp] 167 / 1e-50 AT2G02960 315 / 1e-108 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10037172 [exp] 161 / 2e-48 AT2G02960 303 / 5e-104 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10034454 [exp] 161 / 3e-48 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10021670 [exp] 161 / 4e-48 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10019102 [exp] 158 / 6e-47 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10035010 [exp] 153 / 5e-45 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10004058 [exp] 142 / 3e-41 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10002282 [exp] 141 / 1e-40 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10030472 [exp] 142 / 2e-40 AT2G02960 221 / 4e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12428 [poplar] [flax] DUF3675 Protein of unknown function (DUF3675) CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.013G126600.2 pacid=42811092 polypeptide=Potri.013G126600.2.p locus=Potri.013G126600 ID=Potri.013G126600.2.v4.1 annot-version=v4.1 ATGGTTGATGATTTCATGGTGTGTGTAGAAAGAATCATAGTAGCCTCAACTTGTTTTGAGTCAGTTCATAATGGAGAAAGAGACAGAAATAGAAGTGATG ATGTTGGTGTTGGTATCGGAGCAACAAGTAAGGATGGTAATGTGAGTGAGAGTGTTGTTTCCGTGAAAGGAAATGAAGAAGGGTCTTCATGTTCTCTGAA GAAAGTAGAGATGGTTGAGTGTAGGATATGTCAAGAGGAAGCTGAGGTTCTTGCTATGGAAGCTCCTTGTGCTTGTAATGGCACCCTCAAGTTTGCTCAT AGGAAATGCATTCAGAGATGGTGCAACAAAAAAGGTGACATTACCTGTGAAATCTGCAATCAGGTTTTCTCACCAAATTATTCCTTTCCACCAGCCCGCA TCAATCCTGATGTTATGGCAATTGATATAAGGCAAGCATGGGGCCACCACATTGATCTGCATGATTCTCATCTTCTAGCTCTTGAGCATCAATTGCTACA ATCGGAGTACGAGGATTATGCTGTTGCCAATACAAGCAGCATTGCTTGTCTTCGATCTGTTGCTCTCATTTTGCTTATAATTTTGCTACTCCGCCAAGCT CTAATGGTTACAAGGGATTCAGGGATGGTGCAAGAATCATCAACTTTCTTCAGTTTTCAGGTTTCGCTTCTTCAATTTGCTGGTTTTCTTTTGCCATGCT ATGTGATGGCCCGCTCTTGGTACATTGTGCAAAGCCGAAGGAGAAGACATGGTTAA
AA sequence Show only first row Show all	>Potri.013G126600.2 pacid=42811092 polypeptide=Potri.013G126600.2.p locus=Potri.013G126600 ID=Potri.013G126600.2.v4.1 annot-version=v4.1 MVDDFMVCVERIIVASTCFESVHNGERDRNRSDDVGVGIGATSKDGNVSESVVSVKGNEEGSSCSLKKVEMVECRICQEEAEVLAMEAPCACNGTLKFAH RKCIQRWCNKKGDITCEICNQVFSPNYSFPPARINPDVMAIDIRQAWGHHIDLHDSHLLALEHQLLQSEYEDYAVANTSSIACLRSVALILLIILLLRQA LMVTRDSGMVQESSTFFSFQVSLLQFAGFLLPCYVMARSWYIVQSRRRRHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02960			RING/FYVE/PHD zinc finger supe...		Potri.013G126600 [exp]	0	1
AT3G59310			Eukaryotic protein of unknown ...		Potri.014G151800 [exp]	1.00	0.7062
AT1G02630			Nucleoside transporter family ...		Potri.018G130000 [exp]	11.31	0.6949
AT1G69420			DHHC-type zinc finger family p...		Potri.010G163200 [exp]	12.24	0.6897
AT2G26270			unknown protein		Potri.006G218800 [exp]	16.00	0.6696
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Potri.011G011101 [exp]	17.66	0.6561
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Potri.010G221700 [exp]	20.34	0.6653
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Potri.003G113000 [exp]	24.95	0.6711
AT5G19390			Rho GTPase activation protein ...		Potri.009G069700 [exp]	25.84	0.6891
AT1G55550			P-loop containing nucleoside t...		Potri.003G223800 [exp]	30.00	0.6809
AT4G04720		CPK21	calcium-dependent protein kina...		Potri.004G015500 [exp]	31.43	0.6444

Compare expression of checked genes

Potri.013G126600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.