Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05710 192 / 4e-64 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G31730 171 / 2e-55 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19500 120 / 4e-34 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G20640 109 / 7e-29 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 108 / 7e-29 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G20100 104 / 2e-27 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G29100 103 / 6e-27 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27660 99 / 5e-25 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G49830 93 / 9e-24 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G21340 89 / 7e-22 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G112000 [exp] 273 / 7e-96 AT1G05710 180 / 2e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.009G094300 [exp] 118 / 3e-33 AT3G19500 161 / 2e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G299300 [exp] 116 / 7e-33 AT3G19500 152 / 4e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G185900 [exp] 114 / 1e-31 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G029100 [exp] 116 / 2e-31 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G033000 [exp] 115 / 3e-31 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.003G051600 [exp] 113 / 3e-31 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G129500 [exp] 110 / 2e-29 AT3G20640 289 / 3e-93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G083700 [exp] 109 / 2e-29 AT4G29100 279 / 3e-91 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027064 [exp] 202 / 4e-68 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10025599 [exp] 197 / 3e-66 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013874 [exp] 127 / 4e-36 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041649 [exp] 117 / 6e-33 AT2G31730 117 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007613 [exp] 118 / 9e-33 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018400 [exp] 116 / 3e-32 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10024071 [exp] 105 / 9e-30 AT2G31730 116 / 3e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038550 [exp] 110 / 5e-29 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023669 [exp] 107 / 2e-28 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10010638 [exp] 107 / 6e-28 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G126800.2 pacid=42812564 polypeptide=Potri.013G126800.2.p locus=Potri.013G126800 ID=Potri.013G126800.2.v4.1 annot-version=v4.1 ATGATGGAAAACAAAAGAAGCCCTTGCTCAGTTGACCATGCCAGTCTCACTTCTCTTGCTACCAAAAGGCACAAAGCTGATTTTTCCATCTCCACAAAGG AACGAAAAGAGAAGCTCGGGGAACGAATTGTAGCTCTGCAGCAGCTTGTTTCACCATATGGGAAGACTGATACTGCATCGGTCCTTATGGAGGCAATGGA GTACATACGGTTCCTTCATGAACAAGTTCAGGTGTTGAGTGCTCCATACCTCCAAGGCACATCAACAGCTCAAATGCAGGAGTTAGGTCAATACAGTCTA AGAAACAAAGGTTTGTGTCTCGTTCCGACCTCGTGCACTGCTGGCATTGCTCGCAGCAATGGAGCAGATATCTGGGCCCCCATCAAGAGCCCTTCTCCCA AATTCAATAAGGACGTTTCACCATTTCATTGA
AA sequence Show only first row Show all	>Potri.013G126800.2 pacid=42812564 polypeptide=Potri.013G126800.2.p locus=Potri.013G126800 ID=Potri.013G126800.2.v4.1 annot-version=v4.1 MMENKRSPCSVDHASLTSLATKRHKADFSISTKERKEKLGERIVALQQLVSPYGKTDTASVLMEAMEYIRFLHEQVQVLSAPYLQGTSTAQMQELGQYSL RNKGLCLVPTSCTAGIARSNGADIWAPIKSPSPKFNKDVSPFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05710	bHLH	bHLH153	basic helix-loop-helix (bHLH) ...		Potri.013G126800 [exp]	0	1
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Potri.010G186700 [exp]	1.41	0.8872
AT2G38400		AGT3	alanine:glyoxylate aminotransf...		Potri.016G132200 [exp]	2.44	0.8842	AGT3.1
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.011G044100 [exp]	3.74	0.8208
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Potri.004G212200 [exp]	6.32	0.8031
AT1G71980			Protease-associated (PA) RING/...		Potri.013G111500 [exp]	6.92	0.7976
AT5G46295			unknown protein		Potri.011G079900 [exp]	7.41	0.8258
					Potri.001G382300 [exp]	11.00	0.8029
AT1G21890			nodulin MtN21 /EamA-like trans...		Potri.002G085100 [exp]	11.61	0.7884
AT1G77160			Protein of unknown function (D...		Potri.002G071500 [exp]	12.48	0.8219
AT4G32870			Polyketide cyclase/dehydrase a...		Potri.006G237100 [exp]	14.59	0.8289

Compare expression of checked genes

Potri.013G126800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.