Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59660 867 / 0 C2 domain-containing protein / GRAM domain-containing protein (.1) AT1G02120 94 / 9e-20 VAD1 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) AT1G03370 92 / 3e-19 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT5G50170 92 / 4e-19 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT5G11100 54 / 2e-07 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G63220 51 / 2e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G37740 51 / 3e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G04220 52 / 7e-07 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G18370 50 / 3e-06 NTMCTYPE3, ATSYTF ,NTMC2T3 ,NTMC2TYPE3 C2 domain-containing protein (.1) AT1G48590 48 / 4e-06 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G083500 [exp] 122 / 7e-29 AT5G50170 1109 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.016G003900 [exp] 109 / 1e-24 AT1G03370 1378 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.006G003200 [exp] 100 / 7e-22 AT1G03370 1372 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.014G047600 [exp] 71 / 1e-12 AT1G02120 533 / 0.0 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Potri.002G137800 [exp] 64 / 1e-10 AT1G02120 459 / 6e-158 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Potri.010G110900 [exp] 58 / 1e-09 AT1G70790 233 / 3e-79 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G131500 [exp] 56 / 6e-09 AT3G17980 202 / 5e-67 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.015G046700 [exp] 59 / 7e-09 AT3G18370 968 / 0.0 C2 domain-containing protein (.1) Potri.012G056000 [exp] 58 / 2e-08 AT3G18370 971 / 0.0 C2 domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025600 [exp] 810 / 0 AT3G59660 761 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Lus10027067 [exp] 744 / 0 AT3G59660 714 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Lus10001915 [exp] 115 / 2e-26 AT1G03370 1438 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10015665 [exp] 100 / 9e-22 AT5G50170 1099 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10037679 [exp] 96 / 3e-20 AT5G50170 1097 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10028209 [exp] 91 / 9e-19 AT1G02120 536 / 0.0 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Lus10042913 [exp] 86 / 2e-17 AT1G02120 483 / 2e-164 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Lus10003910 [exp] 77 / 2e-14 AT1G03370 694 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10002235 [exp] 50 / 6e-07 AT1G63220 216 / 2e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10029565 [exp] 50 / 6e-07 AT1G63220 221 / 1e-75 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0266 [poplar] [flax] PH PF02893 [poplar] [flax] GRAM GRAM domain CL0209 [poplar] [flax] Bet_v_1_like PF16016 [poplar] [flax] VASt VAD1 Analog of StAR-related lipid transfer domain
Representative CDS sequence Show only first row Show all	>Potri.013G127000.1 pacid=42811722 polypeptide=Potri.013G127000.1.p locus=Potri.013G127000 ID=Potri.013G127000.1.v4.1 annot-version=v4.1 ATGATTGAAACGGCAGCGCTGGATTTTTTGGTGCCGTCATGGTGGGAGATCAAGGTGACGGTGGCGGCTGCGATGTTTGTGATCTTGTCGTTTTGTTTTT TCTCGTGGAGTGGAGGTGGCGGCGGAGATGGTGGTGGTGGTGATCGGGCGGTGGTTTTGGAGAATTCTGGAGATGGCATTGATGAAAAAGATAAGATGGG ACAGTTGAAAGGAGATTCTCAAGCCAATTCTGCATATATAATCAAGTTGGAATTGTTGGCAGCTAAGAATCTCATTGGTGCAAACTTAAATGGCACTTCA GATCCTTATGCAATCATCACTTGTGGTTCTGAAAAACGTTTCAGCTCAATGGTCCCTGGTTCAAGAAATCCAATGTGGGGAGAAGAGTTCAATTTTTCTG TTGATGAGCTCCCTGTTCAGATTAATGTGACAATATATGACTGGGATATAATTTGGAAAAGTGCTGTTCTTGGTTCCGTAACTGTTCCAGTTGAAAGTGA AGGTCAAACTGGTGCTGAATGGTACACATTAGATAGCCCATCAGGACAGGTTTGTCTCCATATTAAAACAATAAAGGTGCCTGCAAATTCCGCCAGGGCT GTAAATGGATATGCTGGAGCTAATCCTCGAAGGAGGATATCTTCAGATAAACAAGGACCTACGGTGGTTCACCAAAAGCCTGGGCCTTTGCAAACAATAT TTAGCCTCCTTCCAGATGAGGTTGTTGAGCATAGTTATTCATGTGCACTTGAAAGGTCATTCTTATATCATGGCCGCATGTATGTCTCTGCATGGAACAT ATGCTTCCATTCTAATGTGTTTTCTAAGCAAATGAAGGTGGTAATACCATTTGGGGATATAGATGAGATTCGTAGGAGTCAACATGCATTTATTAATCCT GCTGTAACAATTATTCTACGGATGGGTGCTGGTGGACACGGTGTTCCCCCTCTAGGAAGTCCTGATGGTAGAGTCAGGTATAAATTTGCATCCTTTTGGA ACAGGAATCATGCATTAAGAGGGCTGCAGCGTGCAGCAAAGAACTACCGCACAATGCTAGAAGCAGAGAAAAAGGAGAGGGCAGAATCAGCACTGCGTGC ACATAGTAGCTCCATCAGGAGTGGTACAAGGCAAGCCAATATTCCTGAAGATGTTGTGCAGAAAGCTGGAAAGCTTCAAGCTTTCATCAAAGAAGAGGTT CTTGTTGGTATATACAATGATTTATTTCCATGCACTGCTGAGCAGTTTTTTAATATATGTTTGAAGGATGGCTCAACTTTTATAAACGAGTATCGTTCAG TTAGAAAGGATTCAAATCTTGTTATGGGACAGTGGCATGCAGCAGATGAGTATGATGGTCAAGTGAGAGAGATAACATTCAGATCTTTATGCAATAGTCC CATGTGCCCCCCAGACACAGCTGTGACTGAATGGCAGCATTTTGTTCTGTCACCAGATAAGAAAAAGCTTGTGTTTGAAACTGTGCAACAGCCGCATGAT GTTCCCTTTGGATCTTACTTTGAGATTCACTGTCGCTGGAGCCTGGAGACCAATGGTGAAAACTCATGTGCAATGGATATAAAAGCTGGTGCACATTTCA AGAAATGGTGTGTGATGCAATCTAAAATTAGGTCAGGGGCCATCAATGAGTACAAGAAAGAAGTAGATTTGATGTTAGAAATGGCACGCGCGAGTGCTAA ATCACACATGTCCAGTGGTGAGACGACGGACAAGTCCTCGTCCTCTCCAATTATAACACAAGATAGTAGCTAA
AA sequence Show only first row Show all	>Potri.013G127000.1 pacid=42811722 polypeptide=Potri.013G127000.1.p locus=Potri.013G127000 ID=Potri.013G127000.1.v4.1 annot-version=v4.1 MIETAALDFLVPSWWEIKVTVAAAMFVILSFCFFSWSGGGGGDGGGGDRAVVLENSGDGIDEKDKMGQLKGDSQANSAYIIKLELLAAKNLIGANLNGTS DPYAIITCGSEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAEWYTLDSPSGQVCLHIKTIKVPANSARA VNGYAGANPRRRISSDKQGPTVVHQKPGPLQTIFSLLPDEVVEHSYSCALERSFLYHGRMYVSAWNICFHSNVFSKQMKVVIPFGDIDEIRRSQHAFINP AVTIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRGLQRAAKNYRTMLEAEKKERAESALRAHSSSIRSGTRQANIPEDVVQKAGKLQAFIKEEV LVGIYNDLFPCTAEQFFNICLKDGSTFINEYRSVRKDSNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAVTEWQHFVLSPDKKKLVFETVQQPHD VPFGSYFEIHCRWSLETNGENSCAMDIKAGAHFKKWCVMQSKIRSGAINEYKKEVDLMLEMARASAKSHMSSGETTDKSSSSPIITQDSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59660			C2 domain-containing protein /...		Potri.013G127000 [exp]	0	1
AT2G27510		ATFD3	ferredoxin 3 (.1)		Potri.009G163800 [exp]	12.00	0.6113
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.018G112000 [exp]	15.65	0.6789
AT1G15420			unknown protein		Potri.003G060900 [exp]	18.16	0.5881
AT2G31410			unknown protein		Potri.014G145600 [exp]	18.65	0.6423
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.016G031400 [exp]	20.17	0.6145
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.001G330501 [exp]	24.97	0.6477
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.014G080000 [exp]	35.84	0.6431
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.014G090300 [exp]	39.62	0.6152	Pt-WRKY22.2
AT5G53110			RING/U-box superfamily protein...		Potri.012G011500 [exp]	39.94	0.6227
AT1G58025			DNA-binding bromodomain-contai...		Potri.004G223700 [exp]	56.38	0.5937

Compare expression of checked genes

Potri.013G127000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.