Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59670 377 / 1e-125 unknown protein AT4G37440 136 / 9e-35 unknown protein AT3G50040 115 / 7e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G144800 [exp] 249 / 8e-77 AT3G59670 181 / 6e-51 unknown protein Potri.007G051100 [exp] 235 / 3e-71 AT3G59670 178 / 4e-50 unknown protein Potri.019G112201 [exp] 170 / 7e-51 AT3G59670 98 / 7e-25 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008349 [exp] 426 / 3e-144 AT3G59670 277 / 1e-86 unknown protein Lus10027104 [exp] 343 / 1e-113 AT3G59670 244 / 1e-75 unknown protein Lus10001409 [exp] 208 / 3e-61 AT4G37440 155 / 2e-42 unknown protein Lus10014864 [exp] 195 / 6e-56 AT4G37440 155 / 2e-42 unknown protein Lus10011519 [exp] 130 / 8e-33 AT4G37440 134 / 8e-35 unknown protein Lus10019305 [exp] 84 / 6e-18 AT4G37440 83 / 4e-18 unknown protein Lus10027105 [exp] 69 / 2e-14 ND 37 / 0.001
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G127100.3 pacid=42811628 polypeptide=Potri.013G127100.3.p locus=Potri.013G127100 ID=Potri.013G127100.3.v4.1 annot-version=v4.1 ATGGTTCCTGCACAACCAGTGATGGATATCAAACCAGATTGTAAACTGCAAAATTCCACTAACATTGTGATTGATAGAGAGAATAAAAATGTCCAGGATA CATCAGATGGTCTGGGTTTAAGGTGCAAGAATGAATGTGAGGAAACTATTAATCAGGTAAACACTCTGTTGGATGGAAAAGCTACAATTCCAAAGGACTT TGAGGATGTTGAAGTTGATATAGTTACGTGTACAAAAATTAATGAGACCAAATCAGCTTTAGTTGAAGATCCTGATGCAACTGAATATTCAAGCTCATTT GCCGACACTACTTCTGATCCTGAGAAATGTTCTGGACTAAGCGAAGCTGAAATGGAATCACAGTTTTTTGGTGACAGTGATTTGGCATCGCCATTTGATG ATGCATTTAGTAGCATCTTTCAGACAAGGAAGAAGAAGTTAACAAATCATTGGAGGAATTTTGTTCGTCCTCTAATGTGGCGCTGCAAATGGACAGAACT GAAAATCAAAGAAATTAAGTCTCAAGCATCAAAATATGCTAGAGAAATTGCAGCATGTGAACAGAAGAAGCATTCAGGAATTTATCAATCTACATTTGAA GGTTTTTGTTCAAAGTCCCTGCCATTTTCAAATGAGTGTTACAGAAGAAAGGCTGTAAAGAGGAGGAAACGCAAGAGAGTTGAAGACACAAATGATGCAG CATCATACATGACTCATCATAACCTTTTTTCTTATCTGGAAAACAAGAAATCCAATCCAGAGGGCACTTCTATGATTGATGATTTTAGCAATACAGCAAT CACAGACCAACATGTTGATGGCAATGATAAATCTGGCGTTGACAATGACGAAATGTTTATTGAGTTTGGAGATGGTAATAAATCCTTGGAGCAGGTCCTT CGGAAAATTGAAATTGTGCATTCTCGGGTTCACAAGCTGAAGAATCAACTTGACATGTTGATGTCAAAGAATGCCTCCAAGTTTTCATCCTCGGAGAATC TGAGTCTTCTTGCAGCATGTGATGCACAGACTAGCTCTGCTCCTAGTCCTACATTCTCTGCTGGCAATGGAGAAACTATATCAGCAGGAGCTATTTATCC TGCAACTCAGAGTATTCCTGGATATGATATTGGAGATCTGGTTATGCCTGAAAGTGCCATGTCTGGTTTTGGTGAGGCTGTTCATGTGCCTGATATTATT GAAAGCACAGTGGGACTTTTGTCTGATGCTGATGTTACCTTCCATCAGCCACAAATTGGAGATTCAAGCGAAAATATTGTGGATAATGTCCTGATACAAA ATCAAGCAGCTGAAGGAGAGCAAGACACGTTCATGGCGACAAATGTTCAACTCATCGAAAAGCATCATGAACCAGAGAGAGGTGAAGAAGGAGAAAGCAG CGATCCTTTTCTAACTCCAAAATCCGAACCTGATTCAATGGAAAAAAACATGGGGTCTCAGGGGCAATCAGTTCTCAAATCATGTTTGGCCTCCGATCTC CAAATTCCCAGAAACAAGAGAAAGCGAGGGGAACGAAAAGCTGGTTCAGGTGGTTGGAACAAGAAATGCTCAGGTGAGCCTGATAGCCAGTGA
AA sequence Show only first row Show all	>Potri.013G127100.3 pacid=42811628 polypeptide=Potri.013G127100.3.p locus=Potri.013G127100 ID=Potri.013G127100.3.v4.1 annot-version=v4.1 MVPAQPVMDIKPDCKLQNSTNIVIDRENKNVQDTSDGLGLRCKNECEETINQVNTLLDGKATIPKDFEDVEVDIVTCTKINETKSALVEDPDATEYSSSF ADTTSDPEKCSGLSEAEMESQFFGDSDLASPFDDAFSSIFQTRKKKLTNHWRNFVRPLMWRCKWTELKIKEIKSQASKYAREIAACEQKKHSGIYQSTFE GFCSKSLPFSNECYRRKAVKRRKRKRVEDTNDAASYMTHHNLFSYLENKKSNPEGTSMIDDFSNTAITDQHVDGNDKSGVDNDEMFIEFGDGNKSLEQVL RKIEIVHSRVHKLKNQLDMLMSKNASKFSSSENLSLLAACDAQTSSAPSPTFSAGNGETISAGAIYPATQSIPGYDIGDLVMPESAMSGFGEAVHVPDII ESTVGLLSDADVTFHQPQIGDSSENIVDNVLIQNQAAEGEQDTFMATNVQLIEKHHEPERGEEGESSDPFLTPKSEPDSMEKNMGSQGQSVLKSCLASDL QIPRNKRKRGERKAGSGGWNKKCSGEPDSQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59670			unknown protein		Potri.013G127100 [exp]	0	1
AT3G52115		AtCOM1, ATGR1	gamma response gene 1 (.1)		Potri.009G064200 [exp]	1.00	0.8518
AT1G79950			RAD3-like DNA-binding helicase...		Potri.001G180200 [exp]	3.16	0.8482
AT3G18580			Nucleic acid-binding, OB-fold-...		Potri.012G058800 [exp]	4.00	0.8194
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Potri.001G104900 [exp]	4.24	0.7975
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Potri.018G071200 [exp]	5.47	0.7877
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Potri.018G000500 [exp]	10.19	0.7942
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Potri.018G038000 [exp]	10.58	0.7754	MYB222
AT2G47920			Kinase interacting (KIP1-like)...		Potri.014G135000 [exp]	11.83	0.7954
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Potri.007G108200 [exp]	13.19	0.8266
AT3G53950			glyoxal oxidase-related protei...		Potri.016G103400 [exp]	16.73	0.7150

Compare expression of checked genes

Potri.013G127100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.