Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59690 448 / 2e-153 IQD13 IQ-domain 13 (.1) AT2G43680 370 / 9e-121 IQD14 IQ-domain 14 (.1.2.3) AT5G03040 132 / 2e-33 IQD2 IQ-domain 2 (.1.2.3) AT3G52290 131 / 3e-33 IQD3 IQ-domain 3 (.1) AT3G22190 104 / 6e-24 IQD5 IQ-domain 5 (.1.2) AT2G26410 103 / 3e-23 IQD4 IQ-domain 4 (.1) AT2G26180 100 / 8e-23 IQD6 IQ-domain 6 (.1) AT1G01110 96 / 5e-21 IQD18 IQ-domain 18 (.1.2) AT4G00820 96 / 9e-21 IQD17 IQ-domain 17 (.1) AT5G13460 94 / 3e-20 IQD11 IQ-domain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G095700 [exp] 800 / 0 AT3G59690 433 / 2e-147 IQ-domain 13 (.1) Potri.006G131100 [exp] 145 / 1e-37 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.010G218100 [exp] 139 / 8e-36 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.016G086300 [exp] 139 / 2e-35 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.011G153400 [exp] 115 / 2e-27 AT4G00820 331 / 3e-107 IQ-domain 17 (.1) Potri.001G021000 [exp] 115 / 2e-27 AT5G13460 345 / 3e-115 IQ-domain 11 (.1) Potri.001G215200 [exp] 112 / 2e-26 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.002G178500 [exp] 111 / 6e-26 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.001G448100 [exp] 108 / 5e-25 AT4G00820 288 / 2e-90 IQ-domain 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025593 [exp] 567 / 0 AT3G59690 498 / 1e-172 IQ-domain 13 (.1) Lus10027059 [exp] 561 / 0 AT3G59690 496 / 1e-171 IQ-domain 13 (.1) Lus10036508 [exp] 137 / 7e-35 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 132 / 1e-33 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10019916 [exp] 114 / 5e-27 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 113 / 2e-26 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10013522 [exp] 102 / 3e-23 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10013362 [exp] 96 / 9e-21 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10005315 [exp] 94 / 3e-20 AT5G13460 235 / 7e-73 IQ-domain 11 (.1) Lus10004107 [exp] 93 / 7e-20 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.013G127200.4 pacid=42812124 polypeptide=Potri.013G127200.4.p locus=Potri.013G127200 ID=Potri.013G127200.4.v4.1 annot-version=v4.1 ATGGGAAAGAAAGGGAGTTGGTTTTCAGCAATCAAGAGGGTCTTTCTACCAAACTCCAAGGACAAACTAGCTAATGAATCAGATAAGAGAAGCGCAAAAG AAAAGAAGAAGAAGGGTCGTGGAAAACTAAGACATGGAGAGACCACTTCATTCATTCCCCTGTTTAGAGAACCAAGTAGTATCGAGAAAATTTTGGATGA GGCTGAAAGAGAGCATAAATTAATTTTCAGGCCTCCCACACCTCCTGAGCAACCGACTACACCACCCTTTGTGCCTCCAAGATCTGCTTCTCCGAGGGTT GCTTCTCAAAGAGTCACCTCTCCAAGAGCTGCTTCCCCTAGAGCTGCATCTCCAAGGGTTGCTTCTCCTAGAGCAGCTTCTCCTAGGAATGCTCAACGCC ATAAGGAGATATATTACAGACCAGAACCAACTCTAAGAAACCATCATGCTTCAGCAACCAAGATCCAAGCAGCCTATAGAGGCTATGTTGCAAGGAGGAG CTTCAGAGCTTTGAAGGGTCTTGTGAGGCTTCAAGGAGTGATAAGAGGACAGAATGTGAAGCGGCAGACGATGAATGCAATGAAATACATGCAGCTCTTG GTTCGGGTCCAGTCTCAGATTCAGTCACGGAGGATCCAAATGTTAGAAAACCAAGCACGACGTCAAGCTCAAAACAAAAATGATAAAGAAGTGGATGGTA CCTTGGGCAAATGGGGCCAGTCGCCTGAGGCAGGTAATAGTGAAGACTGGGATGACAGCGTTCTGACGAAGGAGGAAATTGACGCAAGGTTGCAGAGAAA GGTGGAGGCAGTCGTCAAGAGAGAAAGGGCCATGGCGTATTCGTATTCCCACCAGCTGTGGAAAGCCTCACCAAAATCTGCTCAGTCATCTCTCATGGAT ATCCGTTCCAATGGATTTCCATGGTGGTGGAACTGGTTAGAACGTCAGCTACCTCCAACGAATCCTCCTGAAAGCCAAGCCTTGAAGAATTTTCAACTTA CACCGCCAAGGCCACATTCAGAGATAAAGCCTAGCCCAAGACCCCCATCAAGTAGCCACAAGCAACAACATCTGGGGTTTGATAATATGGATACTCCCAC ACCGAGATCCTCAAAATCAACTGCATTTGTGTCAACAAGACCAGCGCGAACTCCTCTACTTAGAACTCCACAAGCAAACAGCCCTAGCTTGTCAAGATAT TCAAGAGCAAGAGCCAGTGGAGGGAATTCTCCTTTCGACTTGCCATTGAAGGATGACGATAGCCTCACGAGCTGCCCACCATTTTCAGTGCCAAACTACA TGACTCCTACGGCCTCAGCCAAGGCAAAAACAAGAGCTTATAGTAATCCCAAAGAGAGGTTTCCAGGGACCCCAAACAGTGAAAAGAGGAGACTCTCGTT CCCTCTTACACAAGGCATTGGATCTTTCAAGTGGAACAAAGGCTCCTTCTTCACCAGCAAGGATTCAAGCTCTCAAAGGGGTTTAGATAAGCATCAGTCA CTTCAATCCATAGGAGATTTGAGTGTGGATTCAACCGTCTCGATGCCTGCTACGGTTGGACGAAGGCCATTTAACCGATTTGTGTGA
AA sequence Show only first row Show all	>Potri.013G127200.4 pacid=42812124 polypeptide=Potri.013G127200.4.p locus=Potri.013G127200 ID=Potri.013G127200.4.v4.1 annot-version=v4.1 MGKKGSWFSAIKRVFLPNSKDKLANESDKRSAKEKKKKGRGKLRHGETTSFIPLFREPSSIEKILDEAEREHKLIFRPPTPPEQPTTPPFVPPRSASPRV ASQRVTSPRAASPRAASPRVASPRAASPRNAQRHKEIYYRPEPTLRNHHASATKIQAAYRGYVARRSFRALKGLVRLQGVIRGQNVKRQTMNAMKYMQLL VRVQSQIQSRRIQMLENQARRQAQNKNDKEVDGTLGKWGQSPEAGNSEDWDDSVLTKEEIDARLQRKVEAVVKRERAMAYSYSHQLWKASPKSAQSSLMD IRSNGFPWWWNWLERQLPPTNPPESQALKNFQLTPPRPHSEIKPSPRPPSSSHKQQHLGFDNMDTPTPRSSKSTAFVSTRPARTPLLRTPQANSPSLSRY SRARASGGNSPFDLPLKDDDSLTSCPPFSVPNYMTPTASAKAKTRAYSNPKERFPGTPNSEKRRLSFPLTQGIGSFKWNKGSFFTSKDSSSQRGLDKHQS LQSIGDLSVDSTVSMPATVGRRPFNRFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59690		IQD13	IQ-domain 13 (.1)		Potri.013G127200 [exp]	0	1
AT3G59690		IQD13	IQ-domain 13 (.1)		Potri.019G095700 [exp]	2.00	0.9228
AT1G33800			Protein of unknown function (D...		Potri.013G102200 [exp]	2.23	0.9237
AT3G60380			unknown protein		Potri.014G045300 [exp]	5.65	0.8986
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.009G075300 [exp]	8.77	0.8991
AT5G58530			Glutaredoxin family protein (....		Potri.009G075600 [exp]	9.16	0.8843
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.005G236200 [exp]	9.48	0.9083
AT2G41770			Protein of unknown function (D...		Potri.016G055700 [exp]	12.24	0.8875
AT1G09610			Protein of unknown function (D...		Potri.003G003801 [exp]	13.03	0.9015
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Potri.015G135500 [exp]	14.69	0.8574
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.011G122900 [exp]	17.54	0.8717	Pt-CIP7.1

Compare expression of checked genes

Potri.013G127200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.