Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43710 696 / 0 FAB2, SSI2 suppressor of SA insensitive 2, FATTY ACID BIOSYNTHESIS 2, Plant stearoyl-acyl-carrier-protein desaturase family protein (.1.2) AT3G02630 634 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT5G16240 598 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT3G02610 548 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT5G16230 537 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT3G02620 530 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT1G43800 517 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G179400 [exp] 665 / 0 AT3G02630 640 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.008G077900 [exp] 658 / 0 AT3G02630 657 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.002G209602 [exp] 598 / 0 AT3G02630 592 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.010G179500 [exp] 598 / 0 AT3G02630 595 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.005G187600 [exp] 535 / 0 AT1G43800 613 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027486 [exp] 659 / 0 AT3G02630 649 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Lus10039241 [exp] 658 / 0 AT3G02630 645 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Lus10028627 [exp] 527 / 0 AT1G43800 598 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Lus10018926 [exp] 525 / 0 AT1G43800 594 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [poplar] [flax] Ferritin PF03405 [poplar] [flax] FA_desaturase_2 Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Potri.013G127300.6 pacid=42811553 polypeptide=Potri.013G127300.6.p locus=Potri.013G127300 ID=Potri.013G127300.6.v4.1 annot-version=v4.1 ATGGCTCTCAAGCTCAATCCTTTTGTCTCTCAATCTCAAAAGTTACCTGGGTTTTCTCTTCCACCAATGGCTAGCTTCAGATCTCCTAAGGTTCGCATGG CATATACCCTGAATTCTCGCACCAAGGAGGTTGAGAGTGTCAAGAAGCCTTTTATGCCCCCTAGGGAGGTGCATGTACAAGTCACACATTCTATGCCACC CCAAAAGATTGAAATCTTCAAATCTTTGGAGGATTGGGCTGATCAGAACATCTTGGTTCATCTGAAGCCAGTTGAGAAATGTTGGCAACCACAAGATTTT CTGCCCGATCCTGCCTCTGATGGATTTGAAGAACAAGTCAGGGAACTCAGGGAGAGGGCAAAGGAGCTTCCAGATGATTACTTTGTTGTTTTGGTTGGAG ACATGGTCACAGAAGAAGCTCTTCCAACTTATCAAACAATGCTGAATACCTTGGATGGAGTTCGTGATGAAACAGGTGCTAGCCTTTCATCATGGGCAAT TTGGACAAGGGCATGGACCGCTGAAGAGAATAGGCATGGTGACCTTCTTAACAAGTATCTCTATCTCTCTGGGCGAGTGGACATGAGGCAAATTGAGAAG ACAATTCAATATTTAATTGGGTCAGGAATGGATCCACGGACAGAAAATAGTCCCTACCTGGGGTTCATCTACACTTCTTTCCAAGAGAGGGCAACCTTCA TCTCCCATGGGAACACTGCTAGACATGCCAAGGAGCATGGAGACATAAAATTGGCTCAGATATGTGGTATAATTGCTGCAGACGAAAAGCGCCATGAGAC TGCCTACACAAAGATAGTGGAAAAGCTCTTCGAGATTGATCCTGATGCAACTGTTATGGCTTTTGCTGACATGATGAGGAAGAAAATTGCTATGCCTGCA CACTTGATGTATGATGGCAGTGATGATAACCTTTTTGAGCACTTTTCAGCCGTTGCACAGCGTCTTGGAGTCTACACCGCCAAGGACTATGCCGATATAT TGGAATTCTTGGTGGGCAGGTGGAAGGTGGAGAAATTGACTGGACTTTCTGCTGAGGGCAAAAAAGCTCAGGACTATGTCTGCGGGTTACCTCCAAGAAT TAGAAAGCTGGAAGAAAGAGCTCAAGGGAGGGCCAAGCAAGGACCCATCATTCCTTTCAGTTGGATTTTTGATAGACAAGTGCAGCTCTGA
AA sequence Show only first row Show all	>Potri.013G127300.6 pacid=42811553 polypeptide=Potri.013G127300.6.p locus=Potri.013G127300 ID=Potri.013G127300.6.v4.1 annot-version=v4.1 MALKLNPFVSQSQKLPGFSLPPMASFRSPKVRMAYTLNSRTKEVESVKKPFMPPREVHVQVTHSMPPQKIEIFKSLEDWADQNILVHLKPVEKCWQPQDF LPDPASDGFEEQVRELRERAKELPDDYFVVLVGDMVTEEALPTYQTMLNTLDGVRDETGASLSSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEK TIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARHAKEHGDIKLAQICGIIAADEKRHETAYTKIVEKLFEIDPDATVMAFADMMRKKIAMPA HLMYDGSDDNLFEHFSAVAQRLGVYTAKDYADILEFLVGRWKVEKLTGLSAEGKKAQDYVCGLPPRIRKLEERAQGRAKQGPIIPFSWIFDRQVQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43710		FAB2, SSI2	suppressor of SA insensitive 2...		Potri.013G127300 [exp]	0	1
AT5G40810			Cytochrome C1 family (.1.2)		Potri.004G203800 [exp]	2.82	0.7731
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Potri.008G138400 [exp]	4.24	0.7298	EXGT.4
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.002G249500 [exp]	10.00	0.7105	RAB11.3
AT5G01650			Tautomerase/MIF superfamily pr...		Potri.016G126600 [exp]	16.55	0.7340
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Potri.001G360700 [exp]	20.39	0.6335
AT3G19540			Protein of unknown function (D...		Potri.014G019900 [exp]	22.95	0.6545
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Potri.003G195700 [exp]	33.94	0.6633	Pt-NQR.3
AT1G29040			unknown protein		Potri.011G064600 [exp]	37.78	0.6774
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Potri.012G098500 [exp]	43.35	0.6432
AT3G27050			unknown protein		Potri.001G329600 [exp]	52.64	0.6674

Compare expression of checked genes

Potri.013G127300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.