Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18480 538 / 0 AtSLP2 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT1G07010 194 / 6e-58 AtSLP1 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G077900 [exp] 198 / 2e-59 AT1G07010 538 / 0.0 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038865 [exp] 490 / 2e-173 AT1G18480 496 / 5e-176 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10014985 [exp] 478 / 6e-169 AT1G18480 492 / 1e-174 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10031284 [exp] 198 / 2e-59 AT1G07010 467 / 2e-164 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) Lus10031854 [exp] 118 / 1e-30 AT1G07010 290 / 3e-97 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) Lus10031853 [exp] 54 / 4e-09 AT1G07010 87 / 7e-22 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.013G127500.1 pacid=42811069 polypeptide=Potri.013G127500.1.p locus=Potri.013G127500 ID=Potri.013G127500.1.v4.1 annot-version=v4.1 ATGGAAAACAAAGAAGAAAACCGAAAGGCACTATGCAAACACATCCCAGATCTCCTCTCCTCCTTTGTGGACACCTTTGTTGATTTCTCTGTCAGTGGAG GCCTCTTTTTACCTTCACAAAACCCTAGCTTGGATCCTCGAAACCCCCATCAAGAAACACCCCTTTCTTTACAAACAAGGTACCCAGCTCCTGATAGACT CATTGCCATTGGTGATCTTCATGGGGATTTGGAAAAATCCAAGCAGGCTTTAAGGCTTGCTGGTTTGATTGATGGGTCTGATAAATGGGCTGGTGGGTCA GCTACTGCGGTGCAAGTTGGTGATGTTCTTGATAGAGGTGATGATGAGATACAGATTTTGTATTTCTTGGAGAAGTTGAAGAGGGAGGCAATGAAAGATG GAGGTAATTTTATCACCATGAATGGGAATCATGAGATCATGAATATAGAAGGTGACTTTAGGTATGTGACTAAGTTAGGGTTAAAGGAATTTGAGGATTG GGCTTATTGGTATTGTTTAGGTAATGAAATGAAAAGTTTGTGTGTTGGGTTAGAAAAACCAAAGGATATCTATGATGGGATTCCTTTGAATTTTCGAGGG GTTGATTCAGAGGTTCTTCAGGGGATTAGAGCTAGGATTGCTGCATTGCGGCCTAATGGGCCGATTGCGAATAAGTTTTTGTCAAAGAATGTGACAGTTT TGGTTGTTGGGGATTCGATTTTTGTTCATGGAGGCTTGTTGGCGCAGCATGTTGAGTATGGATTGGAGAGGATTAATGAGGAGGTTAGAGATTGGATTAG TGGGCTGATGGGGAAAGCTGCGCCGAGGTATTGTAGAGGGAGGAATGCAGTGGTTTGGTTGAGGAAGTATTCTGATGTGGAGAAGAATTGTGATTGTTCC ATGCTTGAACATGTGCTTGCTACGGTTCCTGGGGTGAAGAGGATGATCATGGGGCATACAATTCAGGAGGATGGGATTAACGTGGCCTGTAATAATAGAG CTGTTAGGATTGATGTGGGTATGTCCAAAGGATGTGGTGATGGGTTGCCTGAAGTTTTGGAGATTAATCAGAATTCGGACTTACGGGTTCTGACCTCAAA TCCCTTGTATCAGAGTAAGCACAAGTCCTATTTGGATGCTGACACAAAGGAAGGGCTTGGTTTGTTGATTACTGAAAGTGGATCAAAACAAGTGGAAGTG AAGGCCTAG
AA sequence Show only first row Show all	>Potri.013G127500.1 pacid=42811069 polypeptide=Potri.013G127500.1.p locus=Potri.013G127500 ID=Potri.013G127500.1.v4.1 annot-version=v4.1 MENKEENRKALCKHIPDLLSSFVDTFVDFSVSGGLFLPSQNPSLDPRNPHQETPLSLQTRYPAPDRLIAIGDLHGDLEKSKQALRLAGLIDGSDKWAGGS ATAVQVGDVLDRGDDEIQILYFLEKLKREAMKDGGNFITMNGNHEIMNIEGDFRYVTKLGLKEFEDWAYWYCLGNEMKSLCVGLEKPKDIYDGIPLNFRG VDSEVLQGIRARIAALRPNGPIANKFLSKNVTVLVVGDSIFVHGGLLAQHVEYGLERINEEVRDWISGLMGKAAPRYCRGRNAVVWLRKYSDVEKNCDCS MLEHVLATVPGVKRMIMGHTIQEDGINVACNNRAVRIDVGMSKGCGDGLPEVLEINQNSDLRVLTSNPLYQSKHKSYLDADTKEGLGLLITESGSKQVEV KA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18480		AtSLP2	Shewenella-like protein phosph...		Potri.013G127500 [exp]	0	1
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.012G013700 [exp]	2.44	0.9270
					Potri.012G053301 [exp]	6.32	0.9247
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Potri.001G148900 [exp]	27.49	0.8831	Pt-BMY.1
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.007G140500 [exp]	29.66	0.9204
AT1G07650			Leucine-rich repeat transmembr...		Potri.019G007900 [exp]	34.30	0.9076
AT2G25625			unknown protein		Potri.006G248300 [exp]	34.64	0.9226
AT1G76980			unknown protein		Potri.007G104500 [exp]	37.70	0.9200
AT5G09300			Thiamin diphosphate-binding fo...		Potri.005G185400 [exp]	38.88	0.8842
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.015G104400 [exp]	52.84	0.8911
AT5G07100	WRKY	WRKY26	WRKY DNA-binding protein 26 (....		Potri.003G222501 [exp]	65.81	0.8627

Compare expression of checked genes

Potri.013G127500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.