Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49960 927 / 0 unknown protein AT5G43745 219 / 4e-60 Protein of unknown function (DUF1012) (.1) AT5G02940 214 / 3e-58 Protein of unknown function (DUF1012) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G097000 [exp] 1466 / 0 AT5G49960 907 / 0.0 unknown protein Potri.003G008800 [exp] 1024 / 0 AT5G49960 1142 / 0.0 unknown protein Potri.004G223400 [exp] 1004 / 0 AT5G49960 1134 / 0.0 unknown protein Potri.008G160700 [exp] 233 / 2e-64 AT5G43745 1008 / 0.0 Protein of unknown function (DUF1012) (.1) Potri.010G078600 [exp] 224 / 2e-61 AT5G43745 966 / 0.0 Protein of unknown function (DUF1012) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013455 [exp] 1234 / 0 AT5G49960 936 / 0.0 unknown protein Lus10035805 [exp] 1006 / 0 AT5G49960 1146 / 0.0 unknown protein Lus10041014 [exp] 912 / 0 AT5G49960 749 / 0.0 unknown protein Lus10036585 [exp] 892 / 0 AT5G49960 1029 / 0.0 unknown protein Lus10041011 [exp] 746 / 0 AT5G49960 605 / 0.0 unknown protein Lus10039407 [exp] 223 / 1e-61 AT5G43745 1019 / 0.0 Protein of unknown function (DUF1012) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0582 [poplar] [flax] TrkA_C PF06241 [poplar] [flax] Castor_Poll_mid Castor and Pollux, part of voltage-gated ion channel
Representative CDS sequence Show only first row Show all	>Potri.013G128100.1 pacid=42811968 polypeptide=Potri.013G128100.1.p locus=Potri.013G128100 ID=Potri.013G128100.1.v4.1 annot-version=v4.1 ATGTCCCTCGACTCCGAAGACTCACCGTCTCCTTCTTTCGACAGGGACTGGTTCTTCCCTTCACCTTCTTTCATCCACGAGTCACCTCCTAAATCTCCAA AATCCCACCGCAGATTCTCCACTACTCCCAAGCATTCTCCTGATTCCATCCTCTCTAAATCGCAGTCTTTTCGACCATCCTCCTCTATTCCCCCCCCAAC CACTTCTAAATACGGCATACTTCGCCGGCGCGTGGAATTCCCTCGACCACTAATTAAACCTTCAAAACAAGAACAACATCATTCCTTTTTGGACCGGAAA CCCGTTGTTCCCAGTGAGAAGAAGCAGTCTACTGAGAAGGTTTCTTCCGGGCCATCGGTTCATCGGGTCAGATTCAGATGGGATTTGACCATCACAGTAG CTATTGTTATTACTGCTTTGGCTTCGTCGGTACACAAGAATTTTACCTTACATAACCAAGTAATTGATTTGCAGGATCAAATATTGAAACTAAATGTTAC ATTGCGAGCGTGTAATTCATTATCCAATGTAGATGCTTCTGATTCAGTAATGCAGGAGATTGATGATTATGATTATGGTGGTGATAATGGGTTAAAGATT TTGGCTTTGATTGTTTCACTTACGCTATTGTCTATTCCAGTTCTTGCTTTCAAGTACATTGATTTTGTATCAACATCGAGATCGTCGGGTAATATCTGGG AAGCGGTGCTATTGAATAAGCAGCTTGCCTATCGGGTGGATGTTTTCTTATCGGTTCGTCCATATGCGAAGCCTTTGGCGTTGCTAGTTGCGACACTGCT GGTTATTTGTCTTGGTGGCTTGGCAATGTTTGGTGTGACAAATGATAGTTTAGCGGATTGTCTTTGGTTGTCTTGGACATTTGTAGCTGATTCGGGCAAT CATGCTAATTCAGAGGGGATTGGTCCAAGGCTTGTTTCTGTTTCTATTAGCTTTGGTGGGATGCTTATTTTTGCTATGATGCTTGGGCTTGTGTCTGACG CTATTTCTGAGAAGTTCGATTCGTTAAGGAAAGGAAGAAGCAAAGTGGTTGAGCAAAACCATACTCTAATTCTTGGGTGGAGTGATAAATTAGGATCGCT GCTGAATCAGCTTGCTATAGCCAATGAGAGTTTGGGGGGAGGAATTGTTGTGGTGATGGCTGAACGAGACAAAGAAGAGATGGAAATGGATATTGCTAAA ATGGAGTTCGACTTCAAAGGAACATTTGTCATATGCAGAAGCGGGAGCCCTTTAATTCTGGCTGACCTGAAAAAGGTATCTGTCTCCAAGGCCCGTGCAA TAATTGTCCTTGCTGAAGATGGAAATGCTGACCAGAGTGATGCTCGTGCATTGAGAACCGTCTTAAGTCTTATAGGAGTGAAAGAAGGGCTGAAAGGGCA CATTGTCGTGGAGCTAAGTGATCTTGACAATGAGGTTCTTTTGAAACTTGTTGGTGGAGATCTTGTTGAAACTGTTGTAGCTCATGATGTTATTGGCCGC TTGATGATTCAATGTGCTCGGCAGCCAGGACTTGCACAGATCTGGGAAGACATACTCGGGTTTGAAAATTGTGAGTTTTATATCAAAAGATGGCCACAGT TGCACGGCATGCAATTTGAGGACATACTAATCAGTTTTCCTGATGCTATACCTTGTGGGATCAAGGTTGCTTCCTTTGGGGGTAAAATTATCCTGAATCC TGAAGACTCATATGTTCTACAAGAAGGTGATGAAGTCCTTGTCATAGCAGAAGATGACGATAGCTATGCTCCAGCAGCATTACCTACGGTATGGAGAGGA AGTCTACCCAAAGACTCTATTGTTCCAAAGCCTGCAGAAAGGATACTGTTTTGTGGTTGGAGACGAGACATGGAAGATATGATTATGGTGTTGGATGCAT TTTTAGCACAAGGTTCAGAGCTCTGGATGTTCAATGATGTTCCTGAAAAAGAGAGGGAAAGGAAGCTTATTGATGGTGGCCTGGACTTGAGTAGGTTGGA AAATATACAACTGGTTAATCGAGAGGGAAATACAGTCATAAGACGTCATTTAGAAAGCCTTCCTTTGCAATCTTTTGATTCGATTTTAATTTTGGCTGAC GAGTCAGTTGAAGATTCAGCCATGCAAGCAGACTCCAGATCTCTTGCCACATTACTATTGATTCGTGATATTCAGTCGAAGCGTCTCCCAATGTCAAACC AGGTTCATGGAGGAAGCTTCTCACAAGACACATGGATTGGGGAGATGCAGCAGGCTTCAGATAAATCAGTAATAATAAGTGAAATTCTGGACCCAAGAAC TAAAAATTTACTGTCCATGTCAAAGATCAGCGATTATGTTCTATCAAATGAGCTTGTCAGCATGGCGTTGGCCATGGTTGCAGAGGATCAACAAATAAAT GATGTATTAAAAGAGCTCTTCGCAGAGGAGGGAAATGAGCTACAAATAAGGCAAGCGGATCTTTACCTTTTTGAAGGCGAGGAATTGAGTTTCTATGAAG TACTCATTCGAGCCAGACAGAGAAGAGAGATTGTCATTGGATACCGTGTATCTAATGCTGAAAGAGCTGTTATCAATCCACCCGCCAAAAGTGAGAGAAG GAGGTGGTCACTAAAAGATGTTTTTGTGGTTATTGCACAGAAGGAATGGGAATGA
AA sequence Show only first row Show all	>Potri.013G128100.1 pacid=42811968 polypeptide=Potri.013G128100.1.p locus=Potri.013G128100 ID=Potri.013G128100.1.v4.1 annot-version=v4.1 MSLDSEDSPSPSFDRDWFFPSPSFIHESPPKSPKSHRRFSTTPKHSPDSILSKSQSFRPSSSIPPPTTSKYGILRRRVEFPRPLIKPSKQEQHHSFLDRK PVVPSEKKQSTEKVSSGPSVHRVRFRWDLTITVAIVITALASSVHKNFTLHNQVIDLQDQILKLNVTLRACNSLSNVDASDSVMQEIDDYDYGGDNGLKI LALIVSLTLLSIPVLAFKYIDFVSTSRSSGNIWEAVLLNKQLAYRVDVFLSVRPYAKPLALLVATLLVICLGGLAMFGVTNDSLADCLWLSWTFVADSGN HANSEGIGPRLVSVSISFGGMLIFAMMLGLVSDAISEKFDSLRKGRSKVVEQNHTLILGWSDKLGSLLNQLAIANESLGGGIVVVMAERDKEEMEMDIAK MEFDFKGTFVICRSGSPLILADLKKVSVSKARAIIVLAEDGNADQSDARALRTVLSLIGVKEGLKGHIVVELSDLDNEVLLKLVGGDLVETVVAHDVIGR LMIQCARQPGLAQIWEDILGFENCEFYIKRWPQLHGMQFEDILISFPDAIPCGIKVASFGGKIILNPEDSYVLQEGDEVLVIAEDDDSYAPAALPTVWRG SLPKDSIVPKPAERILFCGWRRDMEDMIMVLDAFLAQGSELWMFNDVPEKERERKLIDGGLDLSRLENIQLVNREGNTVIRRHLESLPLQSFDSILILAD ESVEDSAMQADSRSLATLLLIRDIQSKRLPMSNQVHGGSFSQDTWIGEMQQASDKSVIISEILDPRTKNLLSMSKISDYVLSNELVSMALAMVAEDQQIN DVLKELFAEEGNELQIRQADLYLFEGEELSFYEVLIRARQRREIVIGYRVSNAERAVINPPAKSERRRWSLKDVFVVIAQKEWE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49960			unknown protein		Potri.013G128100 [exp]	0	1
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Potri.008G101300 [exp]	1.41	0.8554
AT2G19390			unknown protein		Potri.006G146600 [exp]	4.12	0.8614
AT2G29210			splicing factor PWI domain-con...		Potri.001G244600 [exp]	4.58	0.8022
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.010G213700 [exp]	7.34	0.8379
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G077800 [exp]	8.36	0.7834
AT1G77620			P-loop containing nucleoside t...		Potri.002G084700 [exp]	8.94	0.7826
AT3G50380			Protein of unknown function (D...		Potri.007G034900 [exp]	14.07	0.8052
AT2G24960			unknown protein		Potri.013G025200 [exp]	17.32	0.7571
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.002G141300 [exp]	17.43	0.8104
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.012G118300 [exp]	21.79	0.7155

Compare expression of checked genes

Potri.013G128100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.